.. Snaptron documentation master file, created by
   sphinx-quickstart on Mon Apr 25 16:03:47 2016.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

.. |date| date::
.. |time| date:: %H:%M

Generated on |date| at |time|.

===================
Snaptron User Guide
===================


Questions can be asked in the project's Gitter channel_.

.. _channel: https://gitter.im/snaptron/Lobby


To cite Snaptron:

        Christopher Wilks, Phani Gaddipati, Abhinav Nellore, Ben Langmead;
        Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples, 
        Bioinformatics, (2017), btx547,
        https://doi.org/10.1093/bioinformatics/btx547

There is also the `snapcount <http://www.bioconductor.org/packages/release/bioc/html/snapcount.html>`_ package by Rone Charles in the Landmead group for querying junctions, genes, and exon counts via R/Bioconductor by region (queries Snaptron web services under the hood).

.. toctree::
   :maxdepth: 2
   :caption: Table of Contents

   /data
   /client
   /wsi
   /metadata
   /reftables
   /gui




.. Test link to second page
.. `<second.html>`__


.. * :ref:`genindex`
.. * :ref:`modindex`
* :ref:`search`