# intron

chrom: chr2
strand: -
right_annotated: ENSMUSG00000095362.7:Gm14325:protein_coding:1616
samples:
,0:4494,1:2841,2:107017,3:49061,4:27778,5:37697,6:350923,7:80687,8:141164,9:112025,10:282130,11:534620,12:4281,13:14054,14:18407,15:10398,16:18128,17:30894,18:7451,19:8597


chrom: chr2
strand: -
right_annotated: ENSMUSG00000081574.1:Gm14429:unprocessed_pseudogene:2024
samples:
,0:1788,1:719,2:2068,3:1065,4:683,5:472,6:8136,7:2160,8:2212,9:749,10:2612,11:3351,12:121,13:92,14:378,15:285,16:631,17:285,18:475,19:363


chrom: chr2
strand: +
right_annotated: ENSMUSG00000082901.1:Gm14323:processed_pseudogene:627
samples:
,0:12213,1:6874,2:142974,3:101840,4:34467,5:41330,6:112630,7:28873,8:70667,9:57134,10:124542,11:47093,12:19018,13:11274,14:1810,15:1713,16:2961,17:2951,18:3394,19:3025


chrom: chr2
strand: +
right_annotated: ENSMUSG00000074521.9:Gm14327:protein_coding:1451
samples:
,0:929,1:486,2:15242,3:8768,4:4403,5:5094,6:28780,7:10597,8:22116,9:14863,10:26812,11:47112,12:1928,13:831,14:4438,15:1980,16:3817,17:4046,18:3110,19:1991


chrom: chr2
strand: -
right_annotated: ENSMUSG00000074529.10:Zfp972:protein_coding:864
samples:
,0:242,1:35,2:1454,3:330,4:438,5:1149,6:5557,7:2347,8:4771,9:2578,10:3971,11:6210,12:244,14:88,15:130,16:15,17:43,18:934,19:156


chrom: chr2
strand: -
right_annotated: ENSMUSG00000078862.10:Gm14326:protein_coding:2863
samples:
,0:4540,1:2128,2:90651,3:45943,4:22885,5:33525,6:167536,7:86519,8:121119,9:96457,10:123735,11:231742,12:13287,13:9558,14:22902,15:17697,16:48026,17:47076,18:26468,19:15848


chrom: chr2
strand: +
right_annotated: ENSMUSG00000074519.11:Zfp971:protein_coding:2145
samples:
,0:2138,1:1392,2:55359,3:25834,4:14551,5:22478,6:185479,7:40113,8:39429,9:28621,10:16916,11:42687,12:1921,13:16594,14:10932,15:5796,16:15488,17:4275,18:10338,19:7670


chrom: chr2
strand: -
right_annotated: ENSMUSG00000078861.8:Zfp931:protein_coding:2078
samples:
,0:2123,1:1768,2:109245,3:51623,4:18758,5:26731,6:287731,7:79825,8:110258,9:66856,10:98707,11:231275,12:4330,13:1362,14:16443,15:14913,16:19439,17:14387,18:14211,19:15296


chrom: chr2
strand: +
right_annotated: ENSMUSG00000027525.17:Phactr3:protein_coding:5700
samples:
,0:28001,1:17460,2:7278,3:2294,4:887,5:1735,6:17850,7:2426,8:1338,9:84,11:16640,14:29787,15:14132,16:49931,17:30986,18:19574,19:14262


chrom: chr2
strand: -
right_annotated: ENSMUSG00000049999.4:Ppp1r3d:protein_coding:3267
samples:
,0:3443,1:2445,2:11580,3:6513,4:4642,5:7288,6:23411,7:1917,8:80,9:12079,10:4224,11:16824,14:9088,15:5810,18:7681,19:3483


chrom: chr2
strand: +
right_annotated: ENSMUSG00000070476.10:Fam217b:protein_coding:4541
samples:
,0:26242,1:18563,2:11673,3:7074,4:5195,5:6433,6:95930,7:26989,8:33941,10:35,11:45596,14:83910,15:47080,16:107012,17:70551,18:57505,19:49007


chrom: chr2
strand: +
right_annotated: ENSMUSG00000061897.5:Gm14292:processed_pseudogene:456
samples:
,0:11915,1:6707,2:92430,3:48871,4:37619,5:58811,6:20846,7:4830,8:5338,9:1839,10:12826,11:52821,12:23930,13:1418,14:6998,15:6028,16:9389,17:15529,18:5225,19:9722


chrom: chr2
strand: +
right_annotated: ENSMUSG00000000305.12:Cdh4:protein_coding:6797
samples:
,0:4701,1:3666,2:10057,3:3094,4:1192,5:1934,6:1476990,7:130439,8:445384,9:503475,10:548306,11:1731457,12:261088,13:37491,15:8376,16:300,17:18921,19:4186


chrom: chr2
strand: -
right_annotated: ENSMUSG00000039117.15:Taf4:protein_coding:4416
samples:
,0:40390,1:24260,2:144331,3:63186,4:52259,5:80730,6:91680,7:37878,8:64659,9:16163,10:2150,11:119671,12:38793,13:3,15:6866,16:4349,17:80,18:2409,19:4292


chrom: chr2
strand: +
right_annotated: ENSMUSG00000085704.1:4921531C22Rik:processed_transcript:1905
samples:
,0:96372,1:64209,2:15632,3:8721,4:6338,5:11016,6:227983,7:11787,8:50546,9:68436,10:19753,11:130687,12:151,14:8270,15:1178,16:688,17:23975,18:7595,19:5207


chrom: chr2
strand: +
right_annotated: ENSMUSG00000039108.14:Lsm14b:protein_coding:2892
samples:
,0:151711,1:97126,2:357684,3:169285,4:138540,5:233375,6:430924,7:32796,8:75218,9:69363,10:84693,11:26553,12:9288,13:7224,14:5558,15:5131,16:15779,17:7790,18:6379,19:3892


chrom: chr2
strand: -
right_annotated: ENSMUSG00000027566.14:Psma7:protein_coding:914
samples:
,0:68497,1:39443,2:695396,3:521795,4:338570,5:569771,6:2344449,7:435552,8:1701048,9:1295196,10:2546819,11:1498317,12:425684,13:435743,14:388612,15:152731,16:250082,17:343960,18:476056,19:292093


chrom: chr2
strand: +
right_annotated: ENSMUSG00000039086.9:Ss18l1:protein_coding:4343
samples:
,0:15056,1:9645,2:74044,3:31245,4:47241,5:111124,6:442242,7:61391,8:33689,9:42670,10:1888,11:248479,12:33975,13:22153,14:115284,15:39765,16:112967,17:52794,18:108744,19:74328


chrom: chr2
strand: +
right_annotated: ENSMUSG00000039069.19:Mtg2:protein_coding:1346
samples:
,0:15289,1:8752,2:69370,3:37782,4:20975,5:31045,6:99949,7:13232,8:34665,9:22566,11:40165,12:91960,13:19339,14:23654,15:10695,16:33522,17:45639,18:15718,19:14964


chrom: chr2
strand: +
right_annotated: ENSMUSG00000039050.8:Osbpl2:protein_coding:2805
samples:
,0:88862,1:47928,2:207402,3:120823,4:105033,5:181130,6:283399,7:45580,8:120900,9:157785,10:128781,11:320595,12:134621,13:1808,14:111033,15:71892,16:87332,17:118922,18:139205,19:76910


chrom: chr2
strand: +
right_annotated: ENSMUSG00000039041.15:Adrm1:protein_coding:1535
samples:
,0:86266,1:56170,2:113349,3:55913,4:76566,5:144803,6:233671,7:26464,8:96813,9:97145,10:121756,11:153367,12:127487,13:16831,14:35714,15:25051,16:38405,17:37947,18:83097,19:41834


chrom: chr2
strand: -
right_annotated: ENSMUSG00000015647.9:Lama5:protein_coding:11388
samples:
,0:34555,1:26686,2:196450,3:102715,4:86300,5:77248,6:351837,7:34038,8:196202,9:114867,10:94557,11:141261,12:60949,13:98143,15:1740,18:1195,19:67


chrom: chr2
strand: +
right_annotated: ENSMUSG00000039001.12:Rps21:protein_coding:394
samples:
,0:96016,1:54805,2:1222045,3:792254,4:325767,5:341627,6:966883,7:248043,8:593382,9:487575,10:1431591,11:560091,12:143203,13:125446,14:13579,15:10382,16:19208,17:11416,18:19922,19:13176


chrom: chr2
strand: +
right_annotated: ENSMUSG00000092827.1:Mir3091:miRNA:76
samples:
,0:327,1:205,2:2244,3:1528,4:445,5:820,6:3171,7:349,8:1229,9:627,10:6558,11:962,12:348,13:474,14:278,15:305,16:627,17:1143,18:1010,19:834


chrom: chr2
strand: -
right_annotated: ENSMUSG00000038990.14:Cables2:protein_coding:2975
samples:
,0:66085,1:42234,2:141765,3:60372,4:47959,5:85238,6:410920,7:41019,8:135938,9:104923,10:169987,11:3791,12:946,13:55590,14:14445,15:4312,16:20988,17:14155,18:13280,19:6663


chrom: chr2
strand: +
right_annotated: ENSMUSG00000038963.15:Slco4a1:protein_coding:3230
samples:
,0:100,2:5170,3:586,4:799,5:948,7:621,9:17095,13:9603,14:12485,15:7971,16:9838,17:10277,18:4325,19:3491


chrom: chr2
strand: +
right_annotated: ENSMUSG00000027568.9:Ntsr1:protein_coding:3917
samples:
,0:2491,1:1334,2:399,3:399,4:100,5:150,6:22023,9:1597,14:35375,15:31397,16:41606,17:49025,18:48373,19:29961


chrom: chr2
strand: +
right_annotated: ENSMUSG00000027569.15:Mrgbp:protein_coding:1845
samples:
,0:213342,1:134482,2:110764,3:71992,4:39664,5:72488,6:270094,7:50984,8:158040,9:81884,10:51813,11:14866,12:93654,13:18808,14:1267,15:7334,16:16748,18:14259,19:10214


chrom: chr2
strand: +
right_annotated: ENSMUSG00000049401.10:Ogfr:protein_coding:2449
samples:
,0:66260,1:38361,2:287067,3:204483,4:140907,5:220381,6:123244,7:27470,8:14961,9:30666,10:38698,11:186888,12:74045,13:4363,14:40700,15:72087,16:152717,17:72220,18:91259,19:73345


chrom: chr2
strand: +
right_annotated: ENSMUSG00000027570.15:Col9a3:protein_coding:3046
samples:
,0:118300,1:75849,2:8942,3:2761,4:38906,5:67733,6:1026625,7:159498,8:302394,9:221218,10:1249392,11:1197981,12:1837852,13:81253,15:906,16:523,17:296,18:349,19:71


chrom: chr2
strand: -
right_annotated: ENSMUSG00000038932.13:Tcfl5:protein_coding:2225
samples:
,0:983543,1:655708,2:3929,3:1040,4:1838,5:4062,6:66146,7:12712,8:12414,9:14658,10:90668,11:221339,12:18266,13:6249,17:3222,18:477


chrom: chr2
strand: -
right_annotated: ENSMUSG00000038914.15:Dido1:protein_coding:12667
samples:
,0:405242,1:262193,2:419382,3:240286,4:185056,5:356563,6:656950,7:93123,8:208100,9:119771,10:1712,11:208191,12:91912,13:27043,14:64760,15:82947,16:100484,17:52731,18:83732,19:45537


chrom: chr2
strand: +
right_annotated: ENSMUSG00000027573.11:Gid8:protein_coding:2300
samples:
,0:103960,1:64759,2:178185,3:99175,4:72841,5:112864,6:181094,7:39140,8:99225,9:109430,10:180,11:35578,12:74898,13:5500,14:35785,15:15239,16:36268,17:26958,18:30230,19:28069


chrom: chr2
strand: -
right_annotated: ENSMUSG00000038848.14:Ythdf1:protein_coding:3265
samples:
,0:86903,1:52651,2:341893,3:183295,4:193151,5:385491,6:529557,7:131458,8:79495,9:90787,10:202961,11:130932,12:10772,13:15256,14:29840,15:17409,16:63243,17:45675,18:66755,19:50396


chrom: chr2
strand: -
right_annotated: ENSMUSG00000027574.15:Nkain4:protein_coding:865
samples:
,0:1089,1:1292,2:18166,3:19770,4:5431,5:5454,6:1040,7:9797,8:24016,9:22387,14:5799,15:8030,16:17926,17:4084,18:8828,19:5043


chrom: chr2
strand: +
right_annotated: ENSMUSG00000087293.1:Gm14341:antisense_RNA:667
samples:
,0:239,1:164,2:962,3:1251,4:464,5:374,6:100,7:203,8:1102,9:725,14:277,15:460,16:1027,17:287,18:342,19:502


chrom: chr2
strand: +
right_annotated: ENSMUSG00000027575.19:Arfgap1:protein_coding:3036
samples:
,0:96735,1:69805,2:277829,3:178708,4:104321,5:167432,6:199436,7:21422,8:165409,9:25995,10:1412,11:123756,12:302821,13:14986,14:226316,15:122137,16:191770,17:227951,18:311095,19:248637


chrom: chr2
strand: +
right_annotated: ENSMUSG00000070461.3:9230112E08Rik:sense_overlapping:3352
samples:
,0:7360,1:5636,2:45650,3:26798,4:11154,5:22169,6:76806,7:2334,9:17386,10:3881,11:2159,13:31699,14:15757,15:5392,16:2946,17:430,18:8118,19:5420


chrom: chr2
strand: +
right_annotated: ENSMUSG00000016356.17:Col20a1:protein_coding:4189
samples:
,0:159805,1:105825,2:76224,3:51375,4:14013,5:23369,6:7563,7:1602,9:4912,13:1432,14:12680,15:5443,16:602,17:49,18:1322,19:1537


chrom: chr2
strand: -
right_annotated: ENSMUSG00000027577.14:Chrna4:protein_coding:4755
samples:
,0:4271,1:1941,2:36056,3:27928,4:1695,5:1200,6:9204,7:12916,8:22872,9:30505,14:329015,15:199680,16:307301,17:350979,18:225393,19:183006


chrom: chr2
strand: -
right_annotated: ENSMUSG00000016346.17:Kcnq2:protein_coding:8496
samples:
,0:22865,1:9152,2:300,3:43,4:100,6:269,7:450,14:293213,15:203025,16:397136,17:285038,18:281131,19:207603


chrom: chr2
strand: -
right_annotated: ENSMUSG00000016349.10:Eef1a2:protein_coding:2084
samples:
,0:427,2:288,3:2289,4:229,5:134,6:10328,7:1552,8:213,9:2020,10:240,11:258,14:6230,15:15628,16:24917,17:22524,18:6059,19:9498


chrom: chr2
strand: +
right_annotated: ENSMUSG00000016344.14:Ppdpf:protein_coding:1160
samples:
,0:5675,1:3192,2:121116,3:72659,4:49759,5:80267,6:616925,7:158143,8:541266,9:429342,10:702445,11:133591,12:120903,13:49742,14:35686,15:33381,16:60816,17:52417,18:52657,19:37967


chrom: chr2
strand: +
right_annotated: ENSMUSG00000083993.1:Gm14398:processed_pseudogene:1073
samples:
,0:10989,1:5954,2:21260,3:13423,4:6340,5:8819,6:5603,7:1457,8:7584,9:4814,10:5737,11:9737,12:360,13:180,14:400,15:394,16:532,17:797,18:650,19:300


chrom: chr2
strand: -
right_annotated: ENSMUSG00000027580.17:Helz2:protein_coding:10261
samples:
,0:13291,1:8936,2:190497,3:114327,4:52105,5:70656,6:96758,7:4824,8:9175,9:4493,10:80477,11:90,14:5224,16:685,18:1444,19:188


chrom: chr2
strand: -
right_annotated: ENSMUSG00000038705.13:Gmeb2:protein_coding:4121
samples:
,0:38641,1:27613,2:111339,3:60016,4:48165,5:82665,6:118127,7:20875,8:34703,9:61846,10:38387,11:16249,12:9337,13:2401,14:15424,15:14323,16:12093,17:1427,18:11968,19:6704


chrom: chr2
strand: +
right_annotated: ENSMUSG00000084033.3:Gm7645:processed_pseudogene:788
samples:
,0:227,1:485,2:1682,3:2106,4:1146,5:1207,6:4537,7:154,8:501,10:326,11:90,12:898,14:1180,15:2058,16:2454,17:1436,18:850,19:477


chrom: chr2
strand: -
right_annotated: ENSMUSG00000027581.12:Stmn3:protein_coding:1136
samples:
,0:100,2:145,3:200,4:100,6:291273,7:51431,8:108633,9:125610,10:15587,11:103396,12:84665,13:75530,14:1581713,15:964754,16:1834527,17:1599288,18:1662255,19:1158335


chrom: chr2
strand: +
right_annotated: ENSMUSG00000038685.18:Rtel1:protein_coding:4424
samples:
,0:186628,1:127028,2:189435,3:142527,4:60684,5:115000,6:249719,7:15675,8:56023,9:41249,10:44017,11:38317,12:52650,14:29504,15:11945,16:4265,17:10156,18:50632,19:5289


chrom: chr2
strand: -
right_annotated: ENSMUSG00000038671.15:Arfrp1:protein_coding:2596
samples:
,0:83681,1:53009,2:135326,3:75187,4:81213,5:144014,6:313263,7:64367,8:128630,9:75631,10:356887,11:463269,12:242621,13:17741,14:59426,15:43755,16:77482,17:54743,18:43259,19:44922


chrom: chr2
strand: +
right_annotated: ENSMUSG00000027582.16:Zgpat:protein_coding:2533
samples:
,0:50014,1:32214,2:205151,3:103512,4:116191,5:207270,6:139694,7:9216,8:30635,9:57393,10:224547,11:24533,12:230907,13:31839,14:81630,15:29118,16:60310,17:50586,18:48986,19:35541


chrom: chr2
strand: +
right_annotated: ENSMUSG00000090077.9:Lime1:protein_coding:1959
samples:
,0:20521,1:14836,2:167868,3:84374,4:84835,5:172820,6:204254,7:26245,8:85178,9:22842,10:40722,11:31899,12:126009,13:47803,14:26632,15:13890,16:18599,17:22438,18:28207,19:19256


chrom: chr2
strand: +
right_annotated: ENSMUSG00000085028.2:Slc2a4rg-ps:transcribed_unitary_pseudogene:2976
samples:
,0:3881,1:3561,2:66650,3:31779,4:24395,5:51211,6:318715,7:27125,8:149167,9:53679,10:22087,11:53518,12:110253,13:22561,16:4391,17:10386,18:9595,19:2420


chrom: chr2
strand: -
right_annotated: ENSMUSG00000027583.13:Zbtb46:protein_coding:6460
samples:
,0:32108,1:22368,2:168435,3:75244,4:69702,5:107884,6:76705,7:22497,8:13022,9:21398,11:5471,12:163294,13:28562,14:100,15:582,16:5295,17:1404,18:2548,19:7787


chrom: chr2
strand: +
right_annotated: ENSMUSG00000000827.18:Tpd52l2:protein_coding:3630
samples:
,0:56149,1:29770,2:538061,3:310523,4:243942,5:400934,6:1486477,7:217138,8:776016,9:657189,10:1112740,11:1272960,12:603703,13:230499,14:102068,15:64209,16:137696,17:157425,18:211056,19:118091


chrom: chr2
strand: +
right_annotated: ENSMUSG00000088378.1:Gm25184:snRNA:163
samples:
,0:337,1:229,2:2457,3:954,4:1276,5:2625,6:205980,7:15253,8:119033,9:69814,10:28498,11:183015,12:72304,13:34421,14:635,16:579,18:1234,19:216


chrom: chr2
strand: +
right_annotated: ENSMUSG00000000826.16:Dnajc5:protein_coding:6743
samples:
,0:108929,1:60606,2:603118,3:353866,4:363899,5:701954,6:2095826,7:334431,8:677601,9:392229,10:449724,11:694503,12:108202,13:237767,14:478655,15:509320,16:682994,17:648802,18:604597,19:473953


chrom: chr2
strand: -
right_annotated: ENSMUSG00000089917.7:Uckl1:protein_coding:1849
samples:
,0:31174,1:21531,2:149656,3:89376,4:59726,5:90436,6:706533,7:80235,8:300521,9:233681,10:169976,11:710066,12:153873,13:39136,14:75035,15:32225,16:36016,17:65131,18:85142,19:20364


chrom: chr2
strand: +
right_annotated: ENSMUSG00000010492.10:Uckl1os:antisense_RNA:2274
samples:
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chrom: chr2
strand: -
right_annotated: ENSMUSG00000000823.16:Zfp512b:protein_coding:5714
samples:
,0:416755,1:298830,2:341851,3:199622,4:237913,5:479627,6:2989373,7:268308,8:1663109,9:827285,10:431477,11:2127876,12:2277925,13:574778,14:81472,15:41701,16:31880,17:68087,18:163211,19:71956


chrom: chr2
strand: -
right_annotated: ENSMUSG00000038605.11:Samd10:protein_coding:2164
samples:
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chrom: chr2
strand: +
right_annotated: ENSMUSG00000002455.14:Prpf6:protein_coding:3058
samples:
,0:162491,1:110136,2:447982,3:296479,4:165711,5:250898,6:371141,7:58097,8:111415,9:151257,10:341656,11:797229,12:106168,13:120658,14:112197,15:91495,16:226031,17:174981,18:215719,19:136661


chrom: chr2
strand: +
right_annotated: ENSMUSG00000059540.15:Tcea2:protein_coding:1183
samples:
,0:865699,1:590551,2:46063,3:27588,4:23653,5:44717,6:399926,7:34348,8:118329,9:133375,10:751,11:38186,12:111897,13:32675,14:84383,15:32390,16:64022,17:91760,18:112665,19:60525


chrom: chr2
strand: -
right_annotated: ENSMUSG00000002458.13:Rgs19:protein_coding:2137
samples:
,0:20697,1:12489,2:93964,3:59891,4:25729,5:28221,6:125201,7:38847,8:102186,9:184939,10:410275,11:379135,12:88568,13:59118,14:50458,15:23724,16:42391,17:53132,18:33574,19:14103


chrom: chr2
strand: +
right_annotated: ENSMUSG00000027584.16:Oprl1:protein_coding:3353
samples:
,0:13039,1:7364,2:19445,3:12126,4:650,5:898,6:1776,7:2748,8:180,9:96,14:102681,15:96188,16:122103,17:146008,18:382665,19:260337


chrom: chr2
strand: +
right_annotated: ENSMUSG00000010505.16:Myt1:protein_coding:5627
samples:
,0:18123,1:9001,2:3775,3:879,4:800,5:498,6:53113,7:17122,8:17655,9:23451,10:37,11:7175,12:7012,14:299,15:2458,16:50,17:3859,18:12295,19:1700


chrom: chr2
strand: +
right_annotated: ENSMUSG00000027589.14:Pcmtd2:protein_coding:3573
samples:
,0:71312,1:37246,2:608511,3:303091,4:244845,5:465579,6:948861,7:260512,8:276277,9:333978,10:245692,11:529306,12:86834,13:77528,14:244023,15:132744,16:188050,17:163719,18:238624,19:154470


chrom: chr2
strand: +
right_annotated: ENSMUSG00000038628.8:Polr3k:protein_coding:2948
samples:
,0:47282,1:31226,2:309466,3:176295,4:137371,5:221580,6:1321531,7:316003,8:851269,9:611295,10:1305527,11:2534887,12:145764,13:143597,14:112589,15:30374,16:67304,17:64042,18:70442,19:68703


chrom: chr3
strand: +
right_annotated: ENSMUSG00000069125.2:Rps24-ps2:processed_pseudogene:395
samples:
,0:13929,1:11669,2:59530,3:44459,4:16419,5:17603,6:4763,7:999,8:2348,9:3138,10:4164,11:4292,12:290,13:226,14:635,15:650,16:450,17:399,18:450,19:681


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103224.1:Gm2077:processed_pseudogene:319
samples:
,0:699,1:582,2:803,3:150,4:247,5:478,6:12157,7:4002,8:13713,9:11876,10:38446,11:53926,12:1698,13:1125,14:2198,15:358,16:2582,17:2283,18:3850,19:2284


chrom: chr3
strand: +
right_annotated: ENSMUSG00000091223.2:Gm8775:processed_pseudogene:1327
samples:
,0:7955,1:3696,2:48833,3:22911,4:11650,5:13614,6:23911,7:5630,8:24985,9:18294,10:39006,11:55336,12:11591,13:12813,14:52963,15:40136,16:66432,17:86357,18:73459,19:58815


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104141.1:Gm6140:processed_pseudogene:966
samples:
,0:28189,1:16780,2:31099,3:16351,4:8982,5:18341,6:462,8:712,9:166,10:129,11:470,12:88,14:250,15:430,16:905,17:350,18:450,19:550


chrom: chr3
strand: +
right_annotated: ENSMUSG00000025255.18:Zfhx4:protein_coding:13982
samples:
,0:10649,1:5519,2:104752,3:62905,4:56313,5:117461,6:1202036,7:280394,8:654098,9:253572,10:87234,11:392156,12:60197,13:97701,16:137,17:606,18:2015,19:726


chrom: chr3
strand: -
right_annotated: ENSMUSG00000040374.13:Pex2:protein_coding:2270
samples:
,0:38770,1:22184,2:525350,3:211633,4:137675,5:263952,6:1182285,7:171268,8:899279,9:726873,10:1078935,11:1748697,12:391030,13:406541,14:158647,15:38544,16:71805,17:84644,18:97323,19:68896


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103034.1:Gm8797:protein_coding:490
samples:
,0:203137,1:125126,2:152137,3:119620,4:112780,5:194668,6:3312998,7:2281836,8:2702259,9:2025222,10:3540644,11:2912799,12:689560,13:687823,14:465376,15:219585,16:421802,17:463189,18:635342,19:311678


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103848.1:Gm17934:processed_pseudogene:422
samples:
,0:3269,1:2039,2:1699,3:1135,4:849,5:3190,6:501,7:37,8:312,9:90,11:667,14:1040,15:1599,16:2497,17:1100,18:1290,19:1147


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103733.1:Gm6162:processed_pseudogene:2930
samples:
,0:3875,1:2674,2:6668,3:2943,4:3782,5:8451,7:89,8:794,11:157,12:586,14:1178,15:1200,16:1300,17:800,18:1350,19:1927


chrom: chr3
strand: -
right_annotated: ENSMUSG00000098226.1:Gm5272:processed_pseudogene:982
samples:
,0:50,2:281,3:145,4:100,5:146,6:406,7:39,8:85,9:136,10:89,11:30,13:101,14:158,15:93,16:145,17:94,18:45


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027499.12:Pkia:protein_coding:3667
samples:
,0:8214,1:3048,2:116113,3:70911,4:96936,5:136189,6:504972,7:126934,8:202638,9:46933,10:332376,11:603355,12:54227,13:33658,14:462301,15:255611,16:495014,17:617339,18:738167,19:492474


chrom: chr3
strand: +
right_annotated: ENSMUSG00000102268.1:Gm8826:processed_pseudogene:948
samples:
,1:50,2:144,3:348,4:541,5:631,6:1102,7:215,8:1339,9:822,10:224,11:3333,14:2787,15:1723,16:2019,17:2110,18:1215,19:797


chrom: chr3
strand: +
right_annotated: ENSMUSG00000043542.12:Zc2hc1a:protein_coding:3292
samples:
,0:39844,1:25595,2:192960,3:90468,4:56668,5:88243,6:1029171,7:299882,8:657911,9:304271,10:188481,11:1195640,12:13032,13:117981,14:309013,15:166065,16:254075,17:306547,18:251663,19:185346


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103921.1:Gm5841:processed_pseudogene:2177
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000102463.1:1700003N22Rik:processed_pseudogene:808
samples:
,0:70613,1:51473,2:9860,3:4193,4:5131,5:5783,6:1825,7:246,8:909,9:64,11:1017,12:1290,14:3150,15:1600,16:2237,17:2369,18:3634,19:1796


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027500.10:Stmn2:protein_coding:2073
samples:
,0:350,1:200,2:6308,3:1782,4:1397,5:1296,7:2387,8:40,9:2139,10:96448,11:169119,12:5075,14:889184,15:707055,16:1165916,17:905422,18:751561,19:638145


chrom: chr3
strand: -
right_annotated: ENSMUSG00000040289.8:Hey1:protein_coding:2423
samples:
,0:16052,1:12265,2:37346,3:15578,4:5845,5:8432,6:1146956,7:140518,8:520463,9:465811,10:1207791,11:839942,12:449066,13:283280,14:47104,15:31394,16:63301,17:86832,18:55495,19:22442


chrom: chr3
strand: -
right_annotated: ENSMUSG00000040269.5:Mrps28:protein_coding:783
samples:
,0:36626,1:21401,2:101369,3:62999,4:30518,5:41171,6:335788,7:66744,8:257458,9:231412,10:523305,11:198633,12:74916,13:55102,14:36638,15:14816,16:25114,17:26099,18:46634,19:33124


chrom: chr3
strand: +
right_annotated: ENSMUSG00000081594.1:Gm15467:processed_pseudogene:445
samples:
,0:672,1:516,2:3815,3:3412,4:742,5:1346,6:15883,7:2855,8:4449,9:5821,10:15755,11:4401,12:1517,13:1622,14:115,15:4,16:206,17:91,18:200,19:364


chrom: chr3
strand: -
right_annotated: ENSMUSG00000081657.1:Gm15466:processed_pseudogene:333
samples:
,0:454,1:236,2:7000,3:3608,4:1083,5:1789,6:3193,7:689,8:2392,9:3357,10:3708,11:2706,12:943,13:932,14:393,15:129,16:299,17:342,18:479,19:199


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027506.15:Tpd52:protein_coding:6738
samples:
,0:35523,1:19023,2:382028,3:226782,4:134536,5:279598,6:2729837,7:648923,8:1573733,9:952366,10:509536,11:506267,12:322318,13:163177,14:131347,15:61965,16:167925,17:146847,18:154403,19:108052


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103011.1:Gm8860:processed_pseudogene:445
samples:
,0:3123,1:1880,2:4389,3:2491,4:489,5:915,6:5382,7:1468,8:4731,9:4331,10:5645,11:2554,12:11814,13:976,14:153,15:90,16:649,17:100,18:20,19:38


chrom: chr3
strand: +
right_annotated: ENSMUSG00000069114.8:Zbtb10:protein_coding:7414
samples:
,0:117852,1:85860,2:133986,3:62991,4:93727,5:208669,6:365870,7:123801,8:235548,9:168472,10:58776,11:227126,12:127435,13:4257,14:10061,15:2916,16:10182,17:5071,18:41,19:1976


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097365.7:C030034L19Rik:lincRNA:4870
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000040209.12:Zfp704:protein_coding:13834
samples:
,0:93579,1:63337,2:338243,3:171651,4:542112,5:997529,6:298241,7:50632,8:48986,9:161030,10:261283,11:55037,13:14901,14:32470,15:37803,16:36898,17:77517,18:62222,19:27653


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027508.15:Pag1:protein_coding:8256
samples:
,0:29854,1:15853,2:38215,3:19204,4:179030,5:409865,6:219697,7:24573,8:58152,9:75951,10:23694,11:52080,14:21409,15:2753,16:1348,17:13834,18:4573,19:1381


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027533.10:Fabp5:protein_coding:987
samples:
,0:11429,1:3888,2:233921,3:73246,4:67934,5:146935,6:182145,7:42439,8:143264,9:142070,10:236510,11:59166,12:67115,13:40500,14:45509,15:30641,16:47863,17:34673,18:63257,19:61582


chrom: chr3
strand: +
right_annotated: ENSMUSG00000049230.8:Gm9833:protein_coding:1830
samples:
,0:167900,1:93951,2:248592,3:206960,4:92918,5:168021,6:54109,7:9921,8:24120,9:11764,10:15566,11:10915,12:524,13:1619,14:12994,15:13184,16:18961,17:25869,18:19927,19:10905


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104434.1:Gm37421:processed_pseudogene:132
samples:
,0:2688,1:2047,2:2192,3:889,4:1658,5:2186,6:10244,7:6578,8:14848,9:12536,10:14530,11:13878,12:2005,13:2132,14:1689,15:440,16:1185,17:1149,18:1612,19:976


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027531.16:Impa1:protein_coding:4986
samples:
,0:181437,1:110428,2:445282,3:201161,4:266864,5:538504,6:769618,7:164155,8:532568,9:377506,10:1224362,11:1827575,12:33206,13:56311,14:185043,15:114693,16:263221,17:221694,18:171009,19:119547


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103392.1:Gm38303:protein_coding:536
samples:
,0:23191,1:17268,2:57683,3:26247,4:30004,5:54769,6:45203,7:9050,8:62158,9:34007,10:108949,11:171466,12:3857,13:6982,14:22867,15:14705,16:30860,17:27563,18:20235,19:17103


chrom: chr3
strand: -
right_annotated: ENSMUSG00000039795.14:Zfand1:protein_coding:1610
samples:
,0:6486,1:4020,2:76862,3:47430,4:19533,5:29632,6:521371,7:126749,8:401722,9:319860,10:664382,11:1022735,12:23403,13:75912,14:3156,15:5968,16:19001,17:17569,18:26476,19:13148


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027536.6:Chmp4c:protein_coding:6188
samples:
,0:2661,1:1610,2:14261,3:11761,4:21379,5:22709,6:114698,7:29823,8:5936,9:17168,10:333718,11:217048,12:965,13:11376,14:9176,18:387,19:1269


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027534.16:Snx16:protein_coding:2632
samples:
,0:10080,1:5620,2:55945,3:23561,4:21107,5:32718,6:419360,7:89535,8:100140,9:71176,10:225221,11:517013,12:65153,14:126052,15:58801,16:168059,17:132823,18:56165,19:56624


chrom: chr3
strand: +
right_annotated: ENSMUSG00000095661.1:Gm8935:transcribed_processed_pseudogene:2798
samples:
,0:39168,1:26470,2:11841,3:11497,4:7867,5:12190,6:17496,7:8505,8:27931,9:14029,10:48434,11:90592,12:8166,13:8645,14:2765,15:1743,16:1772,17:1709,18:3655,19:569


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103735.1:Gm38317:processed_pseudogene:343
samples:
,0:13638,1:9174,2:61423,3:39644,4:33813,5:65565,6:18630,7:1613,8:3014,9:8688,10:3794,11:89651,12:2153,13:2574


chrom: chr3
strand: +
right_annotated: ENSMUSG00000039717.16:Ralyl:protein_coding:3399
samples:
,0:1475,1:795,2:390,3:248,4:100,5:313,6:505421,7:65144,8:85639,9:71794,10:64,11:450,12:2336,13:236,14:233488,15:143679,16:343929,17:247355,18:369000,19:246106


chrom: chr3
strand: -
right_annotated: ENSMUSG00000097338.1:Gm2464:lincRNA:2551
samples:
,0:40,5:32,6:17957,7:16786,8:19899,9:2278,10:64,11:450,12:237,13:236,14:7253,15:9227,16:15590,17:11155,18:11115,19:8789


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104514.1:Gm37164:processed_pseudogene:637
samples:
,0:3195,1:2029,2:38591,3:25726,4:9149,5:10834,6:74766,7:17083,8:49359,9:42894,10:139239,11:133260,12:12098,13:11186,14:5950,15:3149,16:3433,17:4883,18:5527,19:4197


chrom: chr3
strand: -
right_annotated: ENSMUSG00000102891.1:Gm19114:processed_pseudogene:1357
samples:
,0:1332,1:479,2:399,3:350,4:487,5:248,6:45,7:359,8:5117,9:477,14:400,15:291,16:500,17:700,18:3846,19:928


chrom: chr3
strand: -
right_annotated: ENSMUSG00000098083.1:Gm8957:processed_pseudogene:1012
samples:
,0:516,1:614,2:389,3:178,4:50,5:70,6:755,7:320,8:166,9:275,10:506,11:516,12:91,14:97,15:200,16:238,17:88,18:250,19:300


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027550.14:Lrrcc1:protein_coding:5928
samples:
,0:1073725,1:692629,2:172150,3:102965,4:57149,5:91024,6:945898,7:185787,8:438898,9:216783,10:651541,11:668278,12:40909,13:10401,14:32582,15:16258,16:37922,17:13938,18:40624,19:37904


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027552.14:E2f5:protein_coding:1782
samples:
,0:61653,1:40021,2:167635,3:102843,4:50233,5:68825,6:534015,7:118024,8:236771,9:146404,10:207416,11:202688,12:157627,13:4774,14:20834,15:10095,16:7027,17:7578,18:7210,19:9363


chrom: chr3
strand: -
right_annotated: ENSMUSG00000078784.8:1810022K09Rik:protein_coding:1396
samples:
,0:5290,1:1516,2:76844,3:47234,4:22970,5:35853,6:972631,7:273162,8:367287,9:386424,10:403161,11:447393,12:43841,13:69192,14:20514,15:10370,16:20845,17:24636,18:30141,19:14925


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027555.8:Car13:protein_coding:2299
samples:
,0:1490,1:645,2:24238,3:20083,4:31347,5:43470,6:1165661,7:187110,8:421352,9:263780,10:535224,11:699744,12:40463,13:103999,15:109


chrom: chr3
strand: -
right_annotated: ENSMUSG00000097790.1:Gm16399:processed_pseudogene:219
samples:
,0:2460,1:1176,2:9326,3:5069,4:1618,5:3310,6:2477,7:92,8:3259,9:1867,10:7035,11:4212,12:89,13:247,14:734,15:620,16:1453,17:1246,18:1250,19:892


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027559.5:Car3:protein_coding:1679
samples:
,0:294,1:149,2:7156,3:69906,4:142234,5:8204,6:2598338,7:561667,8:692985,9:436154,11:242,12:286732,13:204575,15:427,17:169,18:24,19:150


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027562.12:Car2:protein_coding:1788
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000047213.14:Ythdf3:protein_coding:5284
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000103351.1:Gm6350:processed_pseudogene:1339
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000100252.6:Mir124-2hg:lincRNA:6013
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000082896.1:Gm5844:processed_pseudogene:2191
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000039519.6:Cyp7b1:protein_coding:2166
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105280.1:Pgk1-ps3:processed_pseudogene:1201
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027599.9:Armc1:protein_coding:3673
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027601.13:Mtfr1:protein_coding:3173
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000069094.12:Pde7a:protein_coding:6487
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027606.12:Dnajc5b:protein_coding:1259
samples:
,0:611373,1:403794,2:2394,3:879,4:1028,5:1848,6:547797,7:138782,8:317334,9:227771,12:162,13:8528,18:194,19:200


chrom: chr3
strand: +
right_annotated: ENSMUSG00000084339.1:Gm6141:processed_pseudogene:695
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000082766.1:1700064H15Rik:protein_coding:394
samples:
,0:24042,1:16947,2:432,3:339,4:34,5:70,6:22200,7:6315,8:11517,9:7812,12:2971,13:539,16:120,18:500,19:150


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106182.1:Gm7442:processed_pseudogene:383
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000048106.5:4632415L05Rik:lincRNA:4087
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000104031.1:Gm17771:processed_pseudogene:1147
samples:
,0:3255,1:2095,2:4644,3:3425,4:1472,5:3104,6:5470,7:1965,8:7167,9:5728,10:146,11:3558,12:630,13:1761,14:98,15:350,18:149,19:50


chrom: chr3
strand: +
right_annotated: ENSMUSG00000003617.16:Cp:protein_coding:5800
samples:
,0:37339,1:18585,2:350884,3:109255,4:575152,5:632391,6:133581,7:65047,8:83090,9:36055,10:30,11:4006,12:19591,13:1245,14:759,15:1469,16:810,17:1508,18:3462,19:1179


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027615.14:Hps3:protein_coding:4016
samples:
,0:22046,1:12896,2:134782,3:48152,4:133569,5:268066,6:99483,7:38765,8:60410,9:23321,10:47196,11:50380,12:24719,13:16554,14:24019,15:26204,16:16364,17:33932,18:52517,19:37291


chrom: chr3
strand: +
right_annotated: ENSMUSG00000002428.12:Hltf:protein_coding:4955
samples:
,0:22700,1:14182,2:272345,3:128258,4:95510,5:165009,6:496007,7:119024,8:243441,9:122018,10:479823,11:494868,12:15880,13:20653,14:20818,15:13185,16:25279,17:8586,18:18351,19:11650


chrom: chr3
strand: -
right_annotated: ENSMUSG00000019528.18:Gyg:protein_coding:1922
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000039617.8:Gm7488:processed_pseudogene:684
samples:
,0:208610,1:130109,2:202698,3:136758,4:66529,5:101839,6:316131,7:63752,8:198192,9:207019,10:286471,11:233784,12:74023,13:39800,14:32359,15:18021,16:43172,17:28627,18:46195,19:38519


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106019.1:Gm43672:lincRNA:1731
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027630.13:Tbl1xr1:protein_coding:8506
samples:
,0:176097,1:116501,2:281808,3:139451,4:77240,5:137107,6:1233511,7:245878,8:253326,9:325253,10:547070,11:673718,12:18037,13:32120,14:146001,15:66631,16:101226,17:79362,18:66829,19:62726


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103293.1:Gm5842:processed_pseudogene:622
samples:
,0:1383,1:572,2:16131,3:11885,4:3647,5:4625,6:28893,7:6756,8:17415,9:13233,10:39906,11:37321,12:3269,13:4026,14:5223,15:3200,16:4834,17:4097,18:5221,19:4600


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103801.1:Spin3-ps:processed_pseudogene:770
samples:
,0:1748,1:864,2:19002,3:11130,4:8929,5:16287,6:369,7:90,8:6,9:711,11:195,14:1610,15:1799,16:2740,17:2357,18:1449,19:1383


chrom: chr3
strand: -
right_annotated: ENSMUSG00000102758.3:Naaladl2:protein_coding:9330
samples:
,0:9272,1:5340,2:39585,3:17530,4:30530,5:49745,6:815576,7:123017,8:235255,9:172569,10:249219,11:222465,12:5637,13:2461,14:5232,15:1314,16:19635,17:8898,18:398,19:2612


chrom: chr3
strand: +
right_annotated: ENSMUSG00000057036.7:Gm7536:processed_pseudogene:444
samples:
,0:269795,1:162561,2:1982370,3:1332687,4:552451,5:657119,6:1868681,7:392331,8:954034,9:712485,10:2342310,11:713012,12:239364,13:119871,14:30314,15:26585,16:43050,17:28012,18:33076,19:26238


chrom: chr3
strand: -
right_annotated: ENSMUSG00000069083.4:Gm10259:processed_pseudogene:1590
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000063887.13:Nlgn1:protein_coding:11850
samples:
,0:552,1:296,2:2637,3:4892,4:5747,5:5698,6:212426,7:46019,8:62413,9:66918,10:661,11:787,12:2099,13:1593,14:83171,15:89921,16:169560,17:125214,18:242835,19:141537


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104295.1:Gm6197:processed_pseudogene:454
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000039335.11:Spata16:protein_coding:2112
samples:
,0:902054,1:625403,2:3281,3:1943,4:947,5:1692,6:5,7:4,8:46,10:2,11:16,12:22,13:18,14:1710,15:474,16:511,18:304,19:51


chrom: chr3
strand: -
right_annotated: ENSMUSG00000102908.1:Gm7558:processed_pseudogene:1165
samples:
,0:232,1:49,2:2365,3:1674,4:693,5:756,6:23227,7:5839,8:24035,9:11314,10:37209,11:35982,12:3946,13:4286,14:3362,15:3956,16:4194,17:2669,18:4031,19:4035


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027699.19:Ect2:protein_coding:4117
samples:
,0:168751,1:111455,2:201194,3:169917,4:33878,5:54972,6:63971,7:48388,8:22500,9:44142,10:3660,11:76977,14:200,15:187,16:310,17:74,18:373,19:221


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027698.14:Nceh1:protein_coding:4799
samples:
,0:9979,1:5394,2:351317,3:199426,4:65866,5:67725,6:375939,7:48335,8:224438,9:98380,10:112564,11:395619,12:8549,13:77559,14:522104,15:252184,16:355997,17:351639,18:473254,19:340440


chrom: chr3
strand: -
right_annotated: ENSMUSG00000039286.12:Fndc3b:protein_coding:6952
samples:
,0:69786,1:45909,2:1054312,3:533130,4:396912,5:691693,6:1959385,7:366652,8:370582,9:266427,10:557085,11:1451823,12:53045,13:125179,14:14321,15:9054,16:16492,17:2600,18:6137,19:14951


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027695.16:Pld1:protein_coding:5129
samples:
,0:8097,1:5710,2:165754,3:93373,4:86688,5:201656,6:357083,7:133620,8:253372,9:81428,10:351694,11:637992,12:175662,13:199410,15:298,16:6090,17:411,18:187,19:90


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103729.1:Gm37098:processed_pseudogene:244
samples:
,0:50,2:592,3:699,4:250,5:230,6:12031,7:4252,8:3427,9:2231,10:1785,11:3929,12:805,13:274,14:454,15:114,16:654,17:183,18:649,19:135


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027692.16:Tnik:protein_coding:12387
samples:
,0:86614,1:53421,2:71358,3:41799,4:223129,5:603057,6:60450,7:29498,8:52574,9:11535,10:127261,11:191796,14:233908,15:188967,16:267974,17:271844,18:377215,19:222381


chrom: chr3
strand: -
right_annotated: ENSMUSG00000091329.2:1700112D23Rik:antisense_RNA:723
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000070522.4:Gm6505:processed_pseudogene:648
samples:
,0:20038,1:12803,2:60652,3:30903,4:18544,5:28445,6:138288,7:26689,8:110633,9:100634,10:77163,11:190718,12:15085,13:20997,14:13427,15:12465,16:19148,17:9462,18:22691,19:16048


chrom: chr3
strand: +
right_annotated: ENSMUSG00000050192.8:Eif5a2:protein_coding:5027
samples:
,0:76865,1:50912,2:63116,3:30289,4:20753,5:26965,6:393858,7:79308,8:46881,9:101644,10:118668,11:21250,13:900,14:60872,15:44712,16:82670,17:36565,18:70388,19:36456


chrom: chr3
strand: +
right_annotated: ENSMUSG00000039221.10:Rpl22l1:protein_coding:561
samples:
,0:97295,1:56751,2:346746,3:331241,4:88046,5:105459,6:834922,7:199756,8:491727,9:385678,10:1604193,11:1068460,12:106237,13:73541,14:35397,15:22389,16:28192,17:24228,18:24771,19:16706


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104444.1:Gm33051:antisense_RNA:274
samples:
,0:10211,1:7614,2:49393,3:43777,4:12254,5:16548,6:412357,7:92338,8:222745,9:176253,10:600613,11:365866,12:44961,13:33987,14:17165,15:12659,16:14211,17:12940,18:11876,19:8667


chrom: chr3
strand: +
right_annotated: ENSMUSG00000074655.1:Gm1527:protein_coding:2120
samples:
,0:72882,1:46881,2:193,3:248,4:49,5:300,6:501,7:210,8:822,9:89,10:11689,11:2279,12:419,13:176,16:299,17:87,18:356,19:71


chrom: chr3
strand: +
right_annotated: ENSMUSG00000037730.13:Mynn:protein_coding:5555
samples:
,0:65954,1:41422,2:221255,3:113043,4:98490,5:175985,6:266914,7:105689,8:303547,9:249427,10:448287,11:931210,12:44910,13:110953,14:14089,15:6920,16:17638,17:5983,18:6964,19:14124


chrom: chr3
strand: -
right_annotated: ENSMUSG00000097786.3:4933429H19Rik:antisense_RNA:995
samples:
,0:75062,1:50061,2:29088,3:11707,4:9211,5:14581,6:58984,7:20360,8:45388,9:30978,10:55943,11:29817,12:5850,13:3291,14:41365,15:19100,16:32953,17:29457,18:25269,19:19112


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027706.8:Sec62:protein_coding:3967
samples:
,0:188583,1:112843,2:1372381,3:518325,4:437772,5:754508,6:1371553,7:293161,8:765329,9:594696,10:868453,11:1304105,12:148949,13:155883,14:635002,15:382557,16:618656,17:547366,18:439011,19:345689


chrom: chr3
strand: +
right_annotated: ENSMUSG00000037661.14:Gpr160:protein_coding:2215
samples:
,0:422554,1:297832,2:7474,3:6386,4:8531,5:11449,6:133179,7:21246,8:114443,9:29787,10:1391,12:20530,13:43963


chrom: chr3
strand: -
right_annotated: ENSMUSG00000037652.15:Phc3:protein_coding:11682
samples:
,0:59314,1:39918,2:391340,3:197783,4:306999,5:582394,6:508147,7:102222,8:146067,9:83514,10:98986,11:62213,12:10374,13:449,14:43431,15:50443,16:74314,17:28576,18:72344,19:58851


chrom: chr3
strand: +
right_annotated: ENSMUSG00000037643.14:Prkci:protein_coding:4708
samples:
,0:65150,1:36156,2:412744,3:159669,4:283757,5:505359,6:437653,7:77242,8:97021,9:119937,10:12502,11:64249,12:50815,13:20826,14:77019,15:25321,16:64066,17:44168,18:74635,19:70177


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027660.16:Skil:protein_coding:6720
samples:
,0:48039,1:32582,2:964355,3:204367,4:80739,5:133661,6:6219263,7:1065773,8:2195387,9:1721333,10:1204155,11:1703477,12:62852,13:67325,14:148023,15:79870,16:155022,17:137436,18:286442,19:158036


chrom: chr3
strand: +
right_annotated: ENSMUSG00000037625.7:Cldn11:protein_coding:1870
samples:
,0:193913,1:114064,2:59791,3:17580,4:1915238,5:3831347,6:104752,7:9252,8:91362,9:1749,12:11756,13:90,14:817,15:2117,19:100


chrom: chr3
strand: -
right_annotated: ENSMUSG00000069072.9:Slc7a14:protein_coding:9829
samples:
,0:24665,1:14601,2:178,3:200,4:6290,5:13337,6:130504,7:14458,8:435,9:9299,11:56,12:91901,14:268266,15:217946,16:365401,17:316225,18:259842,19:256294


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103998.1:Gm38025:lincRNA:2308
samples:
,0:479,1:300,2:32316,3:20378,4:6066,5:9929,6:1983,8:145,9:720,10:527,11:90,14:200,15:897,16:644,17:500,18:1600,19:350


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103499.5:Gm6558:transcribed_unprocessed_pseudogene:2117
samples:
,0:50275,1:32861,2:150,3:50,5:100,6:974,7:374,8:1179,9:157,10:17883,11:72345,12:876,13:558,15:82,16:50,18:16


chrom: chr3
strand: +
right_annotated: ENSMUSG00000037610.15:Kcnmb2:protein_coding:3128
samples:
,0:337,1:100,2:29190,3:4612,4:1697,5:1592,6:56927,7:17176,8:23347,9:15501,10:94411,12:53181,13:47382,14:776,15:578


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027663.12:Zmat3:protein_coding:7797
samples:
,0:61396,1:44483,2:119224,3:49713,4:35810,5:66738,6:723500,7:89252,8:156994,9:171733,10:53180,11:99381,12:239,13:6916,14:55995,15:59695,16:94655,17:62211,18:44914,19:36709


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027665.13:Pik3ca:protein_coding:9068
samples:
,0:142871,1:92904,2:481942,3:223277,4:189208,5:383599,6:953950,7:196020,8:303565,9:204103,10:391428,11:154997,12:6185,13:5935,14:39153,15:26282,16:85941,17:36433,18:89134,19:53179


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027667.13:Zfp639:protein_coding:2354
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027668.13:Mfn1:protein_coding:4906
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027669.14:Gnb4:protein_coding:6244
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027671.14:Actl6a:protein_coding:2010
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000037531.8:Mrpl47:protein_coding:3364
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027673.12:Ndufb5:protein_coding:1291
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000056900.13:Usp13:protein_coding:7580
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000104283.1:Gm37459:antisense_RNA:3365
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027674.16:Pex5l:protein_coding:4532
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000103423.1:Gm5845:processed_pseudogene:796
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027677.17:Ttc14:protein_coding:9899
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027676.11:Ccdc39:protein_coding:3606
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000044434.5:Gm9791:processed_pseudogene:447
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027680.15:Fxr1:protein_coding:3439
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027679.13:Dnajc19:protein_coding:4004
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105176.1:Gm43668:TEC:5342
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105265.4:Sox2ot:processed_transcript:8067
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000074637.7:Sox2:protein_coding:2057
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000106496.1:Gm7733:processed_pseudogene:919
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105040.1:Ube2l3-ps1:processed_pseudogene:436
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000037400.17:Atp11b:protein_coding:4868
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000097713.1:Gm7741:processed_pseudogene:989
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027708.14:Dcun1d1:protein_coding:5251
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027709.9:Mccc1:protein_coding:2455
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000106096.1:B230207O21Rik:processed_pseudogene:321
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000086392.9:Mccc1os:antisense_RNA:5521
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027710.14:Acad9:protein_coding:3930
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105055.1:Gm43079:antisense_RNA:559
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000033883.11:D3Ertd254e:protein_coding:6689
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027712.13:Anxa5:protein_coding:1731
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027713.6:1810062G17Rik:protein_coding:911
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000083388.1:Gm11550:processed_pseudogene:699
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027714.11:Exosc9:protein_coding:1617
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027715.9:Ccna2:protein_coding:3627
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000037325.10:Bbs7:protein_coding:3114
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027716.13:Trpc3:protein_coding:3694
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000037270.18:4932438A13Rik:protein_coding:15883
samples:
,0:875851,1:625992,2:587288,3:312043,4:257978,5:455807,6:1061390,7:200928,8:407096,9:162055,10:157630,11:665654,12:87985,13:25682,14:257930,15:241052,16:245633,17:217402,18:116103,19:227620


chrom: chr3
strand: -
right_annotated: ENSMUSG00000086090.1:Gm12531:antisense_RNA:487
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000081705.1:Gm12582:processed_pseudogene:697
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000082878.1:Gm12583:processed_pseudogene:853
samples:
,0:12002,1:8004,2:46392,3:34561,4:11166,5:15501,6:16917,7:3191,8:21696,9:15385,10:39109,11:29546,12:4374,13:2448,14:2961,15:2006,16:3194,17:1473,18:3598,19:2456


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027720.7:Il2:protein_coding:1144
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000045031.18:Cetn4:protein_coding:3854
samples:
,0:481070,1:296157,2:20863,3:6193,4:2652,5:3281,6:87851,7:14859,8:43472,9:19535,11:102539,14:10389,15:2461,16:11587,17:2896,18:6134,19:9299


chrom: chr3
strand: +
right_annotated: ENSMUSG00000051444.9:Bbs12:protein_coding:2436
samples:
,0:22878,1:11871,2:78160,3:42134,4:16007,5:19590,6:357475,7:35386,8:98351,9:43785,12:81086,13:145361,16:276,17:151,18:1067,19:3833


chrom: chr3
strand: +
right_annotated: ENSMUSG00000083353.1:Gm12540:processed_pseudogene:319
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000037225.13:Fgf2:protein_coding:6525
samples:
,0:14139,1:9689,2:76108,3:108315,4:74522,5:83286,6:105932,7:5131,8:36142,9:27563,11:96429,12:38236,14:10857,15:3631,16:1570,17:7089,18:13712,19:5024


chrom: chr3
strand: -
right_annotated: ENSMUSG00000050174.15:Nudt6:protein_coding:1544
samples:
,0:9252,1:4276,2:30255,3:24323,4:19141,5:22533,6:33531,7:4789,8:25627,9:29729,10:15685,11:100223,12:20796,14:19820,15:7114,16:3068,17:11822,18:14063,19:8678


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027722.14:Spata5:protein_coding:3332
samples:
,0:254294,1:162135,2:113844,3:65106,4:43322,5:88259,6:120106,7:38344,8:34964,9:54456,10:140980,11:71169,12:20599,13:58325,14:33175,15:15054,16:40118,17:8007,18:42296,19:38152


chrom: chr3
strand: -
right_annotated: ENSMUSG00000081093.1:Gm12565:processed_pseudogene:649
samples:
,0:2776,1:2050,2:31057,3:19887,4:8592,5:16543,6:6479,7:1319,8:2381,9:2633,10:2105,11:3177,12:1283,13:1303,14:13058,15:9331,16:13708,17:10667,18:8653,19:9491


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104605.1:Gm42922:TEC:2078
samples:
,0:684,1:591,2:1759,3:1047,4:6997,5:10536,6:2446,7:590,8:1809,9:256,11:2532,12:843,13:1732,16:873,18:99,19:42


chrom: chr3
strand: +
right_annotated: ENSMUSG00000037211.12:Spry1:protein_coding:2906
samples:
,0:11270,1:9007,2:34946,3:16911,4:75799,5:130654,6:426092,7:59081,8:112751,9:72439,10:74483,11:84806,12:22989,13:856,18:326,19:1268


chrom: chr3
strand: -
right_annotated: ENSMUSG00000058174.7:Gm5148:protein_coding:1451
samples:
,0:211093,1:136389,2:1304482,3:840270,4:338346,5:392848,6:3683125,7:2258276,8:2265966,9:1930446,10:5394378,11:2244051,12:489743,13:378166,14:33082,15:29774,16:57010,17:30558,18:41697,19:40898


chrom: chr3
strand: +
right_annotated: ENSMUSG00000100755.1:Rps23-ps1:processed_pseudogene:425
samples:
,0:218127,1:141276,2:1353318,3:871259,4:350532,5:409931,6:3656095,7:2252735,8:2214611,9:1898619,10:5365711,11:2252926,12:484899,13:377211,14:33419,15:29979,16:54605,17:30389,18:39269,19:38088


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097304.1:Rpl31-ps15:processed_pseudogene:375
samples:
,0:388,1:149,2:3869,3:2898,4:1716,5:1332,6:13240,7:3627,8:11579,9:7395,10:11392,11:4805,12:2360,13:856,14:166,15:133,16:150,17:150,18:319,19:200


chrom: chr3
strand: -
right_annotated: ENSMUSG00000087457.1:Gm7799:processed_pseudogene:476
samples:
,0:50,2:548,3:571,4:144,5:256,6:10044,7:2584,8:2858,9:2828,10:10252,11:4639,12:553,13:770,14:58,18:64


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105359.1:Rpl21-ps10:processed_pseudogene:480
samples:
,0:3486,1:2398,2:29785,3:17030,4:5455,5:6311,6:104559,7:23281,8:31068,9:25624,10:109649,11:42212,12:9561,13:7335,14:1495,15:1163,16:2598,17:1738,18:2086,19:1704


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105943.1:Gm2965:processed_pseudogene:343
samples:
,0:1635,1:749,2:10739,3:6454,4:4498,5:6761,6:1324,7:588,8:1368,9:888,10:1584,11:1207,12:97,13:458,14:1950,15:2076,16:2193,17:2399,18:1694,19:1400


chrom: chr3
strand: -
right_annotated: ENSMUSG00000044864.16:Ankrd50:protein_coding:6462
samples:
,0:38090,1:25086,2:341103,3:160180,4:145836,5:314033,6:341313,7:28053,8:64335,9:20662,10:112414,11:99872,12:7848,13:2993,14:27778,15:15823,16:34128,17:21100,18:37783,19:20503


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105360.1:Gm7824:processed_pseudogene:532
samples:
,2:293,3:89,6:2736,7:1008,8:2012,9:1604,10:7197,11:3525,12:240,13:1007,15:85,16:140,17:122,18:276,19:128


chrom: chr3
strand: +
right_annotated: ENSMUSG00000046743.6:Fat4:protein_coding:16109
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000107333.1:Gm43008:processed_pseudogene:286
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000050533.3:Gm9845:processed_pseudogene:598
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000060798.7:Intu:protein_coding:7428
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000025757.12:Hspa4l:protein_coding:9618
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000025758.10:Plk4:protein_coding:3479
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000025759.11:Mfsd8:protein_coding:3151
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000107741.2:Gm2011:transcribed_unprocessed_pseudogene:1698
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000037818.16:Abhd18:protein_coding:5313
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000107892.1:Gm44524:processed_pseudogene:271
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000097583.2:6430590A07Rik:processed_transcript:1032
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000025762.14:Larp1b:protein_coding:4504
samples:
,0:919704,1:611877,2:61969,3:28546,4:55049,5:125343,6:250332,7:34907,8:178923,9:62595,10:1358,11:2655,12:2447,13:401,14:298,15:11916,16:1620,17:5323,18:4973,19:1722


chrom: chr3
strand: -
right_annotated: ENSMUSG00000049940.7:Pgrmc2:protein_coding:3007
samples:
,0:223951,1:146036,2:320978,3:158258,4:113776,5:190662,6:242091,7:67429,8:22775,9:61078,10:17607,11:145293,12:8470,13:8941,14:25645,15:14581,16:15919,17:24242,18:24658,19:14563


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104616.1:Gm6069:processed_pseudogene:463
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000025764.14:Jade1:protein_coding:7850
samples:
,0:96570,1:58035,2:307832,3:151050,4:309418,5:702117,6:738933,7:79794,8:153642,9:80457,10:53093,11:613210,12:3450,13:117909,14:53787,15:42028,16:24724,17:53821,18:65870,19:51938


chrom: chr3
strand: -
right_annotated: ENSMUSG00000059834.12:Sclt1:protein_coding:3005
samples:
,0:844996,1:567608,2:127508,3:59700,4:29936,5:46114,6:313718,7:66909,8:149343,9:60359,10:87692,11:85945,12:95400,13:1438,14:14912,15:12755,16:12223,17:20711,18:15697,19:20332


chrom: chr3
strand: +
right_annotated: ENSMUSG00000025766.14:D3Ertd751e:protein_coding:4006
samples:
,0:30662,1:19281,2:117578,3:42303,4:25079,5:45800,6:410007,7:70782,8:106191,9:27154,11:265771,12:144003,13:1592,15:3641,17:9323,18:5542,19:2022


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103823.1:Gm7899:processed_pseudogene:1897
samples:
,0:9771,1:6042,2:134993,3:76031,4:34242,5:64690,6:80434,7:17168,8:87205,9:60584,10:102913,11:114640,12:21777,13:19558,14:108187,15:64358,16:110385,17:121449,18:97132,19:65736


chrom: chr3
strand: +
right_annotated: ENSMUSG00000102972.1:Gm37348:processed_pseudogene:1789
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000102149.1:Gm9723:processed_pseudogene:457
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000104303.1:Gm36976:TEC:1110
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000104083.1:Gm29739:processed_pseudogene:529
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000103477.1:5930409G06Rik:TEC:1544
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000097040.6:2610316D01Rik:processed_transcript:924
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000049100.15:Pcdh10:protein_coding:15888
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000100799.2:1700027H10Rik:antisense_RNA:584
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000103534.1:Gm37835:processed_pseudogene:361
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000102190.1:Gm38166:TEC:471
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000090919.6:Pabpc4l:protein_coding:5377
samples:
,0:1346,1:350,2:41859,3:31314,4:7879,5:11281,6:1438182,7:289809,8:489602,9:195744,10:68091,11:1075907,12:4101,13:58120,15:3344,16:3942,18:2130


chrom: chr3
strand: -
right_annotated: ENSMUSG00000072387.3:Gm10356:processed_pseudogene:1258
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000102220.1:Rpl23a-ps5:processed_pseudogene:466
samples:
,0:386,1:250,2:5858,3:2843,4:992,5:1990,6:9246,7:3165,8:4112,9:3663,10:2622,11:1731,12:545,13:54,14:100,15:48,16:99,18:150


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103257.1:Gm7977:processed_pseudogene:748
samples:
,0:1838,1:1493,2:5248,3:2736,4:2381,5:4914,6:9160,7:1110,8:6957,9:4813,10:6383,11:7331,12:1318,13:685,14:4683,15:2247,16:4312,17:4419,18:6719,19:2660


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104309.1:Gm5846:processed_pseudogene:1414
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000102731.1:Gm38261:processed_pseudogene:316
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000037892.13:Pcdh18:protein_coding:5179
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027737.10:Slc7a11:protein_coding:9848
samples:
,0:23912,1:14683,2:46497,3:33030,4:23149,5:38505,6:887404,7:111285,8:414261,9:305192,10:539582,11:504893,12:67463,13:50588,14:128147,15:99848,16:195953,17:151987,18:180793,19:117752


chrom: chr3
strand: +
right_annotated: ENSMUSG00000023087.15:Noct:protein_coding:10658
samples:
,0:36579,1:26495,2:85961,3:40983,4:25229,5:44095,6:499085,7:90377,8:59942,9:114502,10:341079,11:254727,12:4956,13:831,14:103795,15:34010,16:101385,17:54078,18:44312,19:75538


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103313.1:Gm38357:TEC:2464
samples:
,0:648,1:400,2:2299,3:399,4:400,5:295,6:61974,7:11074,8:16714,9:7722,11:2992,14:1172,15:1435,16:591,18:1799


chrom: chr3
strand: -
right_annotated: ENSMUSG00000037174.18:Elf2:protein_coding:8000
samples:
,0:558656,1:380004,2:379785,3:246047,4:271765,5:516769,6:233463,7:45137,8:52520,9:146162,10:28262,11:177229,12:73378,13:100860,14:14284,15:20898,16:15770,17:35173,18:31269,19:20322


chrom: chr3
strand: +
right_annotated: ENSMUSG00000087440.2:4930577N17Rik:TEC:1625
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000104241.1:Gm9442:processed_pseudogene:319
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000037152.11:Ndufc1:protein_coding:1249
samples:
,0:134021,1:92453,2:204877,3:106883,4:53740,5:93129,6:660941,7:167893,8:514083,9:354155,10:581222,11:430480,12:90594,13:52488,14:64267,15:34627,16:82658,17:62197,18:59664,19:47022


chrom: chr3
strand: +
right_annotated: ENSMUSG00000063273.11:Naa15:protein_coding:7480
samples:
,0:508038,1:316773,2:512961,3:298266,4:219250,5:472000,6:1144101,7:269862,8:141800,9:160379,10:241256,11:262556,12:38526,13:136701,14:73458,15:59230,16:138262,17:104732,18:97581,19:100741


chrom: chr3
strand: -
right_annotated: ENSMUSG00000102775.1:Gm38160:TEC:2499
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027739.9:Rab33b:protein_coding:3492
samples:
,0:30187,1:17595,2:131114,3:64608,4:55598,5:88984,6:312558,7:61123,8:131544,9:97083,10:100478,11:267562,12:194984,13:69081,14:46075,15:39643,16:61994,17:51784,18:65331,19:46492


chrom: chr3
strand: -
right_annotated: ENSMUSG00000037111.9:Setd7:protein_coding:7411
samples:
,0:16403,1:8183,2:516174,3:186271,4:125641,5:164224,6:543844,7:94532,8:103824,9:68537,10:25548,11:55424,12:271,13:1271,14:13559,15:18074,16:36333,17:23248,18:10289,19:6164


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097885.7:5031434O11Rik:processed_transcript:3731
samples:
,0:1221,1:250,2:23244,3:6951,4:5025,5:7608,6:91676,7:9600,8:51878,9:33366,10:1010,14:7983,15:1367,16:2213,17:3625,18:12585,19:6413


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104166.1:Gm38247:processed_pseudogene:433
samples:
,0:3196,1:1384,2:7808,3:2848,4:1047,5:962,6:23916,7:6445,8:16604,9:10691,10:47667,11:15850,12:3930,13:3517,14:937,15:733,16:881,17:782,18:667,19:538


chrom: chr3
strand: -
right_annotated: ENSMUSG00000061143.15:Maml3:protein_coding:8426
samples:
,0:18461,1:11022,2:73681,3:51359,4:33317,5:64282,6:238607,7:51233,8:95973,9:91868,10:43609,11:129691,12:3760,13:36760,14:24234,15:34235,16:38870,17:20790,18:22600,19:10420


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104339.1:C130089K02Rik:TEC:6960
samples:
,0:233,5:196,6:604155,7:76761,8:337451,9:163096,10:1491,11:439325,12:125361,13:161,14:94,15:24,16:3750,17:21,18:14727


chrom: chr3
strand: +
right_annotated: ENSMUSG00000044167.6:Foxo1:protein_coding:8665
samples:
,0:34266,1:20424,2:2609834,3:956901,4:220488,5:351009,6:499808,7:81787,8:183095,9:120073,10:13874,11:505183,13:149389,14:9451,15:1600,16:26,18:7390,19:2498


chrom: chr3
strand: +
right_annotated: ENSMUSG00000070490.4:Gm10293:processed_pseudogene:1002
samples:
,0:4010,1:2812,2:67420,3:56117,4:21604,5:35789,6:105597,7:16563,8:57544,9:41138,10:48327,11:45111,12:11462,13:7955,14:28100,15:21444,16:40777,17:28835,18:36407,19:30067


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027742.13:Cog6:protein_coding:3416
samples:
,0:685068,1:483021,2:300937,3:150812,4:118565,5:220295,6:498096,7:115269,8:270084,9:229978,10:605199,11:678640,12:114312,13:90,14:105648,15:70257,16:130907,17:91136,18:58013,19:86795


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104850.1:Gm42901:antisense_RNA:3171
samples:
,0:2101,1:1180,2:5184,3:6855,4:9822,5:15396,6:360,10:266,11:530,12:8075,14:8893,15:1966,16:3783,17:1346,18:7361,19:4245


chrom: chr3
strand: +
right_annotated: ENSMUSG00000048332.13:Lhfp:protein_coding:2108
samples:
,0:33050,1:16809,2:132201,3:164583,4:200327,5:312562,6:60612,7:10220,8:71,10:220412,11:138442,12:26011,13:11548,14:54664,15:46935,16:81915,17:22133,18:34548,19:26581


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104687.1:Gm42899:TEC:2667
samples:
,0:40,2:72,6:19523,7:7909,8:1047,9:321,10:171346,11:439,12:57838,13:73,14:38,15:40,16:896,18:71,19:45


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105397.1:Gm43471:processed_pseudogene:467
samples:
,0:8450,1:5728,2:40706,3:18905,4:6214,5:6192,6:9610,7:2999,8:5555,9:5215,10:14831,11:6540,12:1068,13:1239,14:943,15:766,16:1805,17:1150,18:882,19:900


chrom: chr3
strand: -
right_annotated: ENSMUSG00000042997.13:Nhlrc3:protein_coding:5047
samples:
,0:31006,1:14500,2:132633,3:76462,4:48259,5:87098,6:144498,7:8337,8:441,9:42032,11:296283,13:56681,15:13986,16:3700,17:1356,18:23454,19:12324


chrom: chr3
strand: +
right_annotated: ENSMUSG00000049504.12:Proser1:protein_coding:4472
samples:
,0:20667,1:14708,2:180605,3:78031,4:64478,5:135548,6:180833,7:39034,8:36866,9:18575,10:163263,11:160717,12:34141,13:59702,14:36027,15:5337,16:18943,17:6622,18:30213,19:31417


chrom: chr3
strand: -
right_annotated: ENSMUSG00000037016.11:Frem2:protein_coding:12348
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000105879.1:Gm6204:processed_pseudogene:457
samples:
,0:275819,1:153682,2:1510101,3:1199399,4:412451,5:495985,6:1967771,7:919057,8:1580101,9:1246051,10:3581380,11:1469990,12:266208,13:230840,14:27426,15:18935,16:38123,17:27228,18:52889,19:42450


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027746.13:Ufm1:protein_coding:5321
samples:
,0:45246,1:25805,2:285336,3:134968,4:119269,5:200812,6:639561,7:130379,8:184681,9:126489,10:297054,11:379451,12:41265,13:52059,14:85518,15:23909,16:109919,17:72637,18:96329,19:41327


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103155.1:Gm8109:processed_pseudogene:746
samples:
,0:293,1:100,2:2326,3:1947,4:284,5:999,6:848,7:300,8:723,9:374,10:832,11:508,12:133,13:124,14:100,16:28,17:88,18:695,19:100


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027748.11:Trpc4:protein_coding:3473
samples:
,0:342,1:100,2:12012,3:9808,4:2939,5:3817,6:42909,7:2864,8:1465,9:1888,14:21564,15:9618,16:100,17:28953,18:998,19:13086


chrom: chr3
strand: +
right_annotated: ENSMUSG00000069014.4:Gm5641:transcribed_processed_pseudogene:1488
samples:
,0:109303,1:64503,2:356427,3:212668,4:96437,5:157420,6:185454,7:43895,8:144885,9:124892,10:188516,11:291913,12:12706,13:11336,14:5708,15:3894,16:5675,17:5611,18:6798,19:4074


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027751.13:Supt20:protein_coding:3818
samples:
,0:1748107,1:1215687,2:428020,3:236088,4:190256,5:382111,6:1110990,7:117105,8:403917,9:314268,10:283291,11:855960,12:138869,13:338108,14:14438,15:7468,16:32792,17:29804,18:17948,19:14385


chrom: chr3
strand: -
right_annotated: ENSMUSG00000094487.1:Gm21958:protein_coding:648
samples:
,0:41034,1:28379,2:10250,3:5340,4:5536,5:11125,6:12092,7:2258,8:8339,9:7295,10:7724,11:17989,12:4111,13:6890,14:330,15:340,16:889,17:1051,18:315,19:291


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027752.15:Exosc8:protein_coding:1300
samples:
,0:34877,1:21439,2:171774,3:117386,4:47380,5:67379,6:390801,7:81219,8:194195,9:283644,10:318157,11:513791,12:27973,13:25083,14:12568,15:10177,16:15889,17:15109,18:46886,19:33407


chrom: chr3
strand: +
right_annotated: ENSMUSG00000036632.9:Alg5:protein_coding:1471
samples:
,0:25210,1:13231,2:217172,3:110881,4:75026,5:117200,6:324495,7:69152,8:262267,9:75940,10:399589,11:433278,12:97288,13:37773,14:79659,15:36856,16:50227,17:19785,18:66829,19:42329


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027796.2:Smad9:protein_coding:5368
samples:
,0:4849,1:2213,2:61429,3:27774,4:3098,5:3740,6:1187,7:794,8:32,10:206,11:735,15:5964,16:15528,17:486,18:19490,19:9792


chrom: chr3
strand: -
right_annotated: ENSMUSG00000036615.6:Rfxap:protein_coding:2162
samples:
,0:50037,1:26787,2:85091,3:45799,4:27611,5:43877,6:64635,7:25199,8:36756,9:9976,11:9486,12:73999,14:18209,15:15882,16:29072,17:31349,18:21922,19:29591


chrom: chr3
strand: -
right_annotated: ENSMUSG00000069011.5:Gm10254:processed_pseudogene:867
samples:
,0:122476,1:76664,2:229917,3:151137,4:64644,5:98729,6:228463,7:46215,8:214906,9:168636,10:194501,11:428027,12:29544,13:49025,14:53534,15:13004,16:29914,17:32093,18:55800,19:37872


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105977.1:Gm43555:processed_pseudogene:310
samples:
,0:10809,1:6723,2:17785,3:10492,4:5029,5:10644,6:28635,7:1634,8:10873,10:163,11:10485,12:12984,13:6707,14:4444,15:1866,16:1852,17:4781,18:2930,19:2218


chrom: chr3
strand: +
right_annotated: ENSMUSG00000036580.15:Spg20:protein_coding:5149
samples:
,0:117532,1:72419,2:212327,3:111912,4:125401,5:215144,6:690238,7:85727,8:105896,9:58405,10:182451,11:300540,12:65296,13:114164,14:67785,15:16542,16:26508,17:17269,18:27347,19:16178


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027797.15:Dclk1:protein_coding:13761
samples:
,0:26379,1:15960,2:11175,3:37958,4:14340,5:13975,6:5323153,7:876427,8:2446895,9:953631,10:912911,11:5475753,12:233313,13:85278,14:2104380,15:1584134,16:2656732,17:2260812,18:2267625,19:1850644


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105975.4:Gm42609:antisense_RNA:3306
samples:
,0:345715,1:206107,2:963,3:669,4:471,5:1024,6:22464,7:12351,8:19146,9:17221,10:19513,11:26988,12:1523,13:568,14:10856,15:7097,16:12213,17:10548,18:13056,19:8541


chrom: chr3
strand: -
right_annotated: ENSMUSG00000094962.1:Gm21954:protein_coding:51
samples:
,0:21,2:27,3:66,4:75,5:19,6:419,7:185,8:355,9:251,12:462,14:6267,15:3404,16:6685,17:5389,18:4600,19:3641


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106651.1:Gm42608:TEC:2018
samples:
,0:1736,1:1422,2:52,3:150,4:28,6:8029,7:12214,8:16177,14:36998,15:21964,16:15880,17:15317,18:22985,19:15550


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027799.12:Nbea:protein_coding:10986
samples:
,0:94810,1:55767,2:171879,3:114914,4:59668,5:93594,6:1085863,7:157186,8:344956,9:228240,10:10337,11:115030,12:45007,13:48442,14:286875,15:303385,16:393451,17:413280,18:409119,19:325114


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106572.1:4933417G07Rik:transcribed_processed_pseudogene:1296
samples:
,0:17025,1:10286,2:4203,3:2142,4:853,5:2168,6:474,7:118,8:187,9:708,10:553,11:788,12:77,13:52,14:2310,15:1244,16:3150,17:2647,18:2844,19:2176


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104677.1:Gm43376:antisense_RNA:3420
samples:
,0:873,1:502,2:1410,3:612,4:286,5:546,6:6779,7:4165,8:8197,9:4503,14:832,15:613,16:1215,17:1508,18:6613,19:917


chrom: chr3
strand: -
right_annotated: ENSMUSG00000097366.1:Gm8177:processed_pseudogene:1336
samples:
,0:6268,1:5372,2:13141,3:7339,4:5290,5:9353,6:7661,7:1572,8:10268,9:6677,10:1907,11:12530,14:1320,15:3060,16:2998,17:5800,18:4372,19:2800


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027800.14:Tm4sf1:protein_coding:3424
samples:
,0:5433,1:2528,2:220862,3:95064,4:62596,5:67203,6:630489,7:135334,8:612258,9:415233,10:1726054,11:2314404,12:535542,13:374871,14:660,18:800,19:507


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105452.1:Gm5276:processed_pseudogene:1047
samples:
,0:13701,1:9087,2:38948,3:32934,4:13288,5:21772,6:3463,7:454,8:2785,9:2001,10:1003,11:1405,12:226,13:361,14:172452,15:92721,16:185831,17:205673,18:214189,19:167682


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027803.14:Wwtr1:protein_coding:4779
samples:
,0:102637,1:67569,2:562748,3:250012,4:244920,5:342687,6:539160,7:179486,8:145742,9:123791,10:186734,11:152260,12:26406,15:2650,18:275


chrom: chr3
strand: +
right_annotated: ENSMUSG00000083538.1:Gm16016:processed_pseudogene:550
samples:
,0:100,1:146,2:550,3:99,4:148,5:50,6:10357,7:2133,8:1702,9:22068,11:46,14:188,15:150,16:76,17:196,18:193,19:287


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104965.1:Gm43437:TEC:3955
samples:
,0:500,1:498,2:5226,3:2531,4:2348,5:2756,6:61783,7:10956,8:5273,9:4934,11:2206,14:192,15:91,18:200,19:50


chrom: chr3
strand: -
right_annotated: ENSMUSG00000036513.15:Commd2:protein_coding:2992
samples:
,0:25521,1:14819,2:148901,3:103835,4:50472,5:69458,6:234727,7:64486,8:243390,9:160885,10:499732,11:235913,12:32274,13:66246,14:17839,15:21957,16:47767,17:49914,18:60969,19:45919


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104623.1:Gm6394:processed_pseudogene:477
samples:
,0:20502,1:12705,2:126789,3:88186,4:33801,5:38639,6:86791,7:21526,8:41900,9:30377,10:108695,11:48631,12:9799,13:9252,14:8306,15:7096,16:14293,17:7605,18:8902,19:7338


chrom: chr3
strand: +
right_annotated: ENSMUSG00000036503.13:Rnf13:protein_coding:4067
samples:
,0:76791,1:36999,2:699490,3:251189,4:297450,5:562565,6:1039294,7:346328,8:715624,9:612869,10:580835,11:1160357,12:170701,13:221692,14:174439,15:115180,16:225293,17:201683,18:186707,19:155781


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106421.1:Gm9645:processed_pseudogene:792
samples:
,0:1498,1:998,2:9745,3:7741,4:2460,5:3275,6:2020,7:1466,8:3851,9:3907,10:78926,11:308,12:360,13:35,14:124,15:146,16:450,17:200,18:717,19:200


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027805.16:Pfn2:protein_coding:3541
samples:
,0:391442,1:262759,2:365931,3:262577,4:183823,5:351683,6:1748193,7:286067,8:796723,9:522277,10:2305933,11:2930981,12:210782,13:58524,14:752646,15:513537,16:871345,17:896142,18:1054299,19:752418


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106246.1:Gm18867:processed_pseudogene:1179
samples:
,0:12254,1:9368,2:5736,3:3400,4:2430,5:4205,6:1883,7:803,8:2653,9:1717,10:164,11:184,12:871,13:58,14:10074,15:6027,16:9171,17:8995,18:9459,19:7085


chrom: chr3
strand: -
right_annotated: ENSMUSG00000069008.3:Gm5537:processed_pseudogene:1252
samples:
,0:28054,1:15272,2:398348,3:401577,4:96050,5:164579,6:739134,7:134910,8:612611,9:374787,10:1178666,11:1187791,12:225034,13:107121,14:337583,15:191754,16:342896,17:340036,18:328481,19:280478


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027806.9:Tsc22d2:protein_coding:9799
samples:
,0:169524,1:113734,2:188475,3:102289,4:103338,5:206456,6:917863,7:220933,8:249746,9:203954,10:174599,11:166263,12:7881,13:3589,14:26586,15:20550,16:50467,17:13792,18:54514,19:28258


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027808.8:Serp1:protein_coding:4611
samples:
,0:238609,1:157561,2:1177083,3:629400,4:555027,5:1021918,6:1154943,7:318102,8:478559,9:404229,10:1772533,11:1108813,12:371360,13:90800,14:118453,15:54137,16:121983,17:114577,18:272221,19:118230


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027810.14:Eif2a:protein_coding:2299
samples:
,0:46294,1:25830,2:499405,3:310906,4:123948,5:158766,6:673167,7:172950,8:346889,9:355556,10:465345,11:921286,12:76359,13:36492,14:43826,15:62047,16:115465,17:49173,18:87932,19:66638


chrom: chr3
strand: +
right_annotated: ENSMUSG00000075700.9:Selenot:protein_coding:3157
samples:
,0:277498,1:169790,2:988922,3:427118,4:566833,5:1065900,6:810931,7:253550,8:227438,9:137499,10:18117,11:643771,12:14783,13:93651,14:58361,15:21432,16:34246,17:28691,18:45494,19:26946


chrom: chr3
strand: -
right_annotated: ENSMUSG00000070471.3:Erich6:protein_coding:2195
samples:
,0:251567,1:157266,2:1791,3:1069,4:696,5:1763,6:692,7:637,8:3102,9:2198,11:824,15:189,16:2589,17:429,18:377,19:23


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105021.1:Gm8234:processed_pseudogene:1107
samples:
,0:228,1:298,2:5854,3:1816,4:649,5:1595,6:28239,7:1976,8:4568,9:619,10:83239,11:2493,12:846,13:641,14:250,15:397,16:991,17:450,18:2231,19:1532


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105336.1:AU022133:processed_pseudogene:873
samples:
,0:5873,1:3931,2:1040,3:890,4:883,5:1290,6:508,7:94,8:85,9:82,10:362,11:414,12:178,13:58,15:50,16:50,18:9,19:107


chrom: chr3
strand: -
right_annotated: ENSMUSG00000036432.8:Siah2:protein_coding:2511
samples:
,0:316204,1:228355,2:105945,3:43054,4:42355,5:77829,6:247685,7:43602,8:25592,9:39265,11:9202,12:6581,13:30554,15:1799,16:22576,17:10356,18:6105,19:8772


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097725.4:4930593A02Rik:lincRNA:2032
samples:
,0:42919,1:31037,2:337,3:122,4:324,5:522,6:305996,7:41482,8:33848,9:30533,10:73409,11:49176,12:31226,13:25080,15:75,16:371,17:2645,18:266,19:1


chrom: chr3
strand: -
right_annotated: ENSMUSG00000101860.4:Mindy4b-ps:protein_coding:1374
samples:
,0:225,1:63,2:100,6:280659,7:30936,8:24887,9:58761,10:379608,11:213734,12:111480,13:80714,15:685,17:2867,18:541


chrom: chr3
strand: -
right_annotated: ENSMUSG00000043850.15:Clrn1:protein_coding:3211
samples:
,0:1095,1:666,2:250,4:441,5:487,6:561205,7:138414,8:369915,9:332028,10:368461,11:628872,12:20829,13:97609,14:3733,15:1025,18:3418


chrom: chr3
strand: +
right_annotated: ENSMUSG00000059776.7:Rpl13-ps6:processed_pseudogene:636
samples:
,0:169590,1:109229,2:754338,3:531281,4:205980,5:232549,6:1646155,7:342891,8:1102146,9:892701,10:3074711,11:1045060,12:365989,13:163134,14:46571,15:26114,16:38208,17:30202,18:33235,19:31416


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105945.1:Gm43570:antisense_RNA:3688
samples:
,0:3074,1:1159,2:500,3:350,4:472,5:797,6:3461,7:5690,8:11714,9:496,12:27,14:896,15:298,16:62,18:657,19:382


chrom: chr3
strand: +
right_annotated: ENSMUSG00000056476.13:Med12l:protein_coding:12501
samples:
,0:54531,1:39472,2:36378,3:29067,4:26145,5:52051,6:594520,7:75719,8:190440,9:100018,10:330354,11:490575,12:20560,14:34939,15:22897,16:26591,17:13270,18:39167,19:30078


chrom: chr3
strand: -
right_annotated: ENSMUSG00000036334.12:Igsf10:protein_coding:10150
samples:
,0:15436,1:9961,2:81265,3:93387,4:52875,5:59322,6:399009,7:65305,8:80889,9:73220,10:250203,11:274951,14:6452,15:8340,16:4181,17:5220,18:20998,19:10309


chrom: chr3
strand: +
right_annotated: ENSMUSG00000102550.1:Gm8276:processed_pseudogene:1812
samples:
,0:519484,1:345548,2:175765,3:156137,4:72053,5:98248,6:34016,7:7306,8:11544,9:9397,10:13570,11:37199,12:3729,13:3111,14:4638,15:5891,16:3662,17:6656,18:7503,19:6298


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103986.1:Gm5539:processed_pseudogene:966
samples:
,0:174356,1:106833,2:65826,3:44597,4:29536,5:43581,6:102978,7:20248,8:90044,9:70462,10:88181,11:126423,12:12075,13:16896,14:31879,15:17982,16:30522,17:29351,18:33452,19:26469


chrom: chr3
strand: -
right_annotated: ENSMUSG00000102757.1:Gm2756:processed_pseudogene:400
samples:
,0:546,1:292,2:1529,3:1934,4:868,5:1248,6:4308,7:89,8:443,9:1151,10:1474,11:254,12:177,13:87,14:738,16:445,17:195,18:280,19:249


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027763.13:Mbnl1:protein_coding:5804
samples:
,0:68537,1:38636,2:817726,3:479970,4:403146,5:699990,6:898145,7:232551,8:526463,9:177480,10:68104,11:1919035,12:120060,13:80127,14:30497,15:60164,16:77512,17:28203,18:104488,19:62988


chrom: chr3
strand: -
right_annotated: ENSMUSG00000102298.1:Gm33707:processed_pseudogene:569
samples:
,0:100,1:187,2:100,3:1323,4:299,5:700,6:878,7:726,8:2207,9:1612,10:3699,11:6175,12:2187,13:2017,14:8085,15:4942,16:8796,17:8843,18:11841,19:6223


chrom: chr3
strand: +
right_annotated: ENSMUSG00000102490.1:Gm36985:processed_pseudogene:379
samples:
,0:276,1:128,2:1078,3:1021,4:302,5:793,6:11118,7:1412,8:6505,9:5762,10:9632,11:11265,12:1653,13:793,14:953,15:43,16:50,17:49,18:885,19:155


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027694.9:Gm8325:transcribed_processed_pseudogene:464
samples:
,0:26810,1:16411,2:53380,3:32574,4:28430,5:42600,6:106750,7:17170,8:99518,9:72154,10:132013,11:150221,12:79265,13:46047,14:64273,15:23412,16:49698,17:55965,18:70648,19:44959


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027765.6:P2ry1:protein_coding:4291
samples:
,0:144,1:790,2:17367,3:16880,4:16446,5:24904,6:188958,7:21455,8:16450,9:25304,10:89,12:65105,19:1190


chrom: chr3
strand: +
right_annotated: ENSMUSG00000036894.3:Rap2b:protein_coding:6793
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000053706.2:B430305J03Rik:protein_coding:3702
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000098208.1:Gm8349:processed_pseudogene:1003
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000103502.1:9330121J05Rik:antisense_RNA:3009
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000036885.14:Arhgef26:protein_coding:5638
samples:
,0:4167,1:4037,2:19539,3:15976,4:10188,5:9880,6:1062320,7:169659,8:459707,9:335973,10:1247,11:92491,12:71353,13:30506,14:524,15:1750,16:10237,17:5993,18:653,19:7942


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027770.5:Dhx36:protein_coding:5620
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000063001.10:Gm9701:processed_pseudogene:427
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027820.12:Mme:protein_coding:8578
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000036834.16:Plch1:protein_coding:8188
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000103905.1:Gm34379:processed_pseudogene:290
samples:
,0:148,1:29,2:1722,3:740,4:390,5:1000,6:431,7:222,8:286,9:280,10:218,11:118,12:96,13:63,14:97,15:99,16:100,17:47,18:2,19:50


chrom: chr3
strand: -
right_annotated: ENSMUSG00000048581.12:E130311K13Rik:protein_coding:1640
samples:
,0:8357,1:4972,2:86108,3:44962,4:22174,5:29922,6:66566,7:19353,8:71481,9:85258,10:325,11:155980,12:1080,13:8785,14:57687,15:34184,16:46908,17:17000,18:71287,19:39460


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027822.16:Slc33a1:protein_coding:3548
samples:
,0:112970,1:77130,2:262118,3:119771,4:61470,5:93902,6:368068,7:62247,8:121522,9:88181,10:194977,11:156971,12:31014,13:540,14:121642,15:52086,16:150783,17:95305,18:78354,19:43966


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097724.2:Gm26850:antisense_RNA:2669
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027823.9:Gmps:protein_coding:8105
samples:
,0:1091089,1:682876,2:463723,3:277135,4:146438,5:268152,6:3220633,7:494632,8:2650042,9:1400235,10:1722357,11:10399256,12:17013,13:358337,14:173439,15:98650,16:226881,17:133034,18:292634,19:209502


chrom: chr3
strand: +
right_annotated: ENSMUSG00000093447.1:Gm5139:processed_pseudogene:249
samples:
,0:24,2:199,3:159,4:91,5:146,6:754,7:204,8:183,9:346,10:413,11:191,12:81,14:247,15:618,16:1106,17:512,18:1172,19:225


chrom: chr3
strand: +
right_annotated: ENSMUSG00000093671.1:Gm20656:unprocessed_pseudogene:518
samples:
,0:56150,1:36867,2:21084,3:13005,4:6579,5:10089,6:22846,7:2444,8:12312,9:8362,10:26971,11:99620,12:1362,13:2831,14:3715,15:1408,16:5253,17:3013,18:4698,19:5078


chrom: chr3
strand: +
right_annotated: ENSMUSG00000093484.1:Gm20657:unprocessed_pseudogene:515
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027827.16:Kcnab1:protein_coding:3245
samples:
,0:12306,1:7016,2:101998,3:129356,4:81708,5:112109,6:158359,7:10954,8:49723,9:73082,13:146,14:13093,15:43440,16:68705,17:14392,18:125829,19:27802


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104093.1:A330015K06Rik:antisense_RNA:6190
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027828.12:Ssr3:protein_coding:3914
samples:
,0:152291,1:83684,2:2333833,3:1494561,4:817717,5:1185005,6:8660303,7:1156437,8:5558784,9:3497619,10:4102230,11:8904361,12:696399,13:217165,14:163922,15:82152,16:203343,17:204614,18:247587,19:236247


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103880.1:Gm37009:processed_pseudogene:361
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000074580.11:4931440P22Rik:transcribed_processed_pseudogene:4031
samples:
,0:22212,1:16709,2:18625,3:9306,4:7012,5:8795,6:5587,7:2697,8:4011,9:10963,10:1686,11:1983,12:3686,13:136,14:3136,15:425,16:458,17:1302,18:1324,19:397


chrom: chr3
strand: +
right_annotated: ENSMUSG00000034640.9:Tiparp:protein_coding:4191
samples:
,0:82325,1:50659,2:614648,3:200905,4:161793,5:244519,6:1278661,7:234484,8:570188,9:512004,10:376183,11:468899,12:117863,13:6144,14:14155,15:6322,16:8319,17:12309,18:11075,19:10752


chrom: chr3
strand: +
right_annotated: ENSMUSG00000082280.4:Gm5847:processed_pseudogene:1595
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000074579.13:Lekr1:protein_coding:2461
samples:
,0:39433,1:21551,2:39072,3:17550,4:11317,5:21548,6:271082,7:98567,8:103060,9:69283,11:17624,12:180,13:33668,14:498,15:1262,16:3725,17:7327,18:933,19:1511


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104037.1:Gm37776:TEC:2497
samples:
,0:800,1:499,2:2684,3:1861,4:1349,5:2348,6:14530,7:18832,8:62031,9:8322,12:76115,13:1938,14:8146,15:400,16:9974


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027829.15:Ccnl1:protein_coding:2169
samples:
,0:159900,1:96144,2:522291,3:193983,4:134128,5:234214,6:1504190,7:295792,8:355374,9:307365,10:643818,11:357947,12:25622,13:60080,14:67946,15:31626,16:68368,17:29683,18:67026,19:46814


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103041.1:Gm37305:antisense_RNA:4279
samples:
,0:56517,1:32872,2:84756,3:33531,4:32763,5:50690,6:88668,7:19537,8:31025,9:43495,10:4647,11:12061,12:11434,14:8231,15:4431,16:18047,17:2856,18:5556,19:6220


chrom: chr3
strand: -
right_annotated: ENSMUSG00000102914.1:Gm35106:processed_pseudogene:250
samples:
,0:17154,1:11824,2:68694,3:40347,4:20697,5:31418,6:9609,7:1931,8:9895,9:7703,10:8065,11:5513,12:825,13:1216,14:546,15:145,16:691,17:447,18:1082,19:489


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027831.9:Veph1:protein_coding:6431
samples:
,0:2989,1:1200,2:1977,3:1285,4:3950,5:3916,6:684465,7:117421,8:226604,9:192285,10:42314,11:563278,12:17044,13:5214,14:268,15:161,18:369,19:141


chrom: chr3
strand: +
right_annotated: ENSMUSG00000034544.17:Rsrc1:protein_coding:5528
samples:
,0:185748,1:125232,2:207952,3:132259,4:90284,5:169450,6:827763,7:114217,8:314335,9:190941,10:329007,11:884197,12:180346,13:24431,14:39284,15:37228,16:60185,17:56987,18:45546,19:40940


chrom: chr3
strand: +
right_annotated: ENSMUSG00000048416.15:Mlf1:protein_coding:1164
samples:
,0:1969434,1:1292831,2:352703,3:110135,4:24088,5:37481,6:2025717,7:527714,8:1420754,9:1106408,10:1297235,11:1591751,12:255997,13:167310,14:7132


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027774.16:Gfm1:protein_coding:4078
samples:
,0:83917,1:56113,2:249343,3:137606,4:76569,5:133433,6:513160,7:46520,8:258462,9:77222,10:127558,11:357766,12:117053,13:27507,14:130120,15:67474,16:150348,17:49077,18:135554,19:96491


chrom: chr3
strand: -
right_annotated: ENSMUSG00000047557.2:Lxn:protein_coding:1112
samples:
,0:16860,1:12395,2:87227,3:52168,4:28547,5:47892,6:185717,7:33569,8:75404,9:75411,10:277033,11:211706,12:18429,13:8765,14:11710,15:4081,16:15201,17:7676,18:6834,19:4105


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027775.9:Mfsd1:protein_coding:3011
samples:
,0:39992,1:22829,2:401994,3:243210,4:203272,5:338797,6:597398,7:135285,8:158724,9:113799,10:1272785,11:287668,12:246306,13:117349,14:23684,15:23278,16:42615,17:27784,18:56176,19:41478


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103206.1:Gm8515:processed_pseudogene:576
samples:
,0:34332,1:24312,2:51260,3:32417,4:25533,5:39571,6:13838,7:360,8:9689,9:4220,10:11448,11:49934,12:3015,13:3288,14:18702,15:9428,16:17060,17:15828,18:22665,19:15635


chrom: chr3
strand: +
right_annotated: ENSMUSG00000102422.1:Gm21949:protein_coding:2369
samples:
,0:18630,1:11598,2:32304,3:13735,4:51560,5:92040,6:1262884,7:162534,8:343036,9:275186,10:1790218,11:1284519,12:334517,13:176072,14:403497,15:259659,16:586483,17:515940,18:749431,19:402123


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027777.15:Schip1:protein_coding:3092
samples:
,0:16349,1:10114,2:32905,3:14353,4:55070,5:97218,6:1325306,7:179089,8:387073,9:310626,10:2068273,11:1453699,12:384427,13:206803,14:459155,15:294418,16:669019,17:592248,18:856284,19:457249


chrom: chr3
strand: +
right_annotated: ENSMUSG00000058360.5:Gm10040:pseudogene:1662
samples:
,0:90,1:50,2:310,3:187,4:196,5:335,6:964,7:75,8:637,9:66,11:167,13:90,14:68,15:126,16:70,17:196,18:50


chrom: chr3
strand: +
right_annotated: ENSMUSG00000102853.1:Gm7270:processed_pseudogene:1128
samples:
,0:150,2:531,3:150,4:50,5:549,6:9696,7:1933,8:453,9:414,10:3032,11:1768,12:133,13:509,14:200,15:587,16:248,17:445,18:150,19:148


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103218.1:Gm7270:processed_pseudogene:1131
samples:
,0:150,2:531,3:150,4:50,5:549,6:9750,7:1933,8:452,9:413,10:3030,11:1765,12:133,13:509,14:200,15:585,16:248,17:444,18:150,19:148


chrom: chr3
strand: +
right_annotated: ENSMUSG00000046999.2:1110032F04Rik:protein_coding:2578
samples:
,0:50,1:100,2:253501,3:59431,4:5475,5:3698,8:16243,13:5302,14:68584,15:25056,16:91331,17:51154,18:41764,19:37874


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027778.15:Ift80:protein_coding:4092
samples:
,0:376358,1:232031,2:193988,3:131548,4:66347,5:89368,6:723906,7:151932,8:237516,9:205470,10:170059,11:322,12:116487,13:1977,14:62105,15:45540,16:49696,17:8859,18:25338,19:10391


chrom: chr3
strand: -
right_annotated: ENSMUSG00000093384.1:Gm20689:processed_pseudogene:279
samples:
,0:7794,1:3944,2:6690,3:4526,4:2494,5:3533,6:6007,7:720,8:13159,9:2579,10:5207,11:5694,12:1174,13:3310,14:1700,15:950,16:1750,17:2550,18:960,19:650


chrom: chr3
strand: -
right_annotated: ENSMUSG00000093402.1:Gm18588:processed_pseudogene:492
samples:
,0:72857,1:44919,2:87437,3:43856,4:57781,5:97543,6:39921,7:9223,8:36582,9:24459,10:167724,11:241084,12:22901,13:630,14:23538,15:8637,16:27186,17:23377,18:21581,19:17532


chrom: chr3
strand: -
right_annotated: ENSMUSG00000093505.1:Gm20691:processed_pseudogene:333
samples:
,0:4549,1:2100,2:8354,3:3543,4:2646,5:4459,9:180,11:1170,12:141,13:450,14:600,15:1438,16:1897,17:1047,18:1500,19:500


chrom: chr3
strand: +
right_annotated: ENSMUSG00000034349.14:Smc4:protein_coding:4316
samples:
,0:1450987,1:957238,2:845653,3:633665,4:171110,5:281331,6:519686,7:106424,8:216148,9:150020,10:154486,11:14669,12:74566,13:41316,14:934,15:7899,16:7883,17:15479,18:9866,19:3259


chrom: chr3
strand: -
right_annotated: ENSMUSG00000034317.14:Trim59:protein_coding:2939
samples:
,0:171732,1:106506,2:212820,3:150404,4:129964,5:283153,6:88133,7:29012,8:62908,9:1443,10:165641,11:404251,15:7869,16:7249,17:7686,18:8194,19:1850


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027782.10:Kpna4:protein_coding:8819
samples:
,0:621117,1:405522,2:539500,3:254504,4:306598,5:602684,6:835808,7:269736,8:335488,9:302060,10:596457,11:568105,12:29388,14:102998,15:25867,16:83101,17:40051,18:76422,19:56876


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103094.1:Gm37558:TEC:2983
samples:
,0:378,1:376,2:316,3:33,4:399,5:100,6:21792,7:12164,8:40941,9:19980,11:89186,15:862,16:4338,18:1929,19:1077


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027784.10:Ppm1l:protein_coding:9417
samples:
,0:49643,1:28988,2:226039,3:85175,4:168140,5:313699,6:714693,7:89725,8:222905,9:199922,10:463257,11:56258,12:27964,13:17332,14:386893,15:400989,16:541569,17:460781,18:574743,19:336969


chrom: chr3
strand: -
right_annotated: ENSMUSG00000091315.1:Gm17214:processed_pseudogene:541
samples:
,0:600,1:497,2:5338,3:2622,4:1089,5:1044,6:4525,7:3469,8:1733,9:1690,10:4238,11:1562,12:226,13:324,14:22,15:50,16:79,17:36,18:100,19:78


chrom: chr3
strand: -
right_annotated: ENSMUSG00000090941.1:Gm17212:processed_pseudogene:259
samples:
,1:50,2:268,3:453,4:17,5:63,6:26305,7:6249,8:15553,9:6075,10:525,11:929,12:144,13:77,15:280,16:493,18:988,19:150


chrom: chr3
strand: -
right_annotated: ENSMUSG00000098006.1:Gm8565:processed_pseudogene:1014
samples:
,0:1751,1:798,2:25729,3:21296,4:8568,5:15681,6:18297,7:3623,8:8042,9:5191,10:6177,11:6063,12:2545,13:1238,14:5738,15:4344,16:8837,17:5363,18:9274,19:7189


chrom: chr3
strand: -
right_annotated: ENSMUSG00000043300.2:B3galnt1:protein_coding:2028
samples:
,0:44901,1:27261,2:314095,3:183046,4:69947,5:115676,6:271865,7:33880,8:255465,9:183856,11:118244,12:15854,13:3947,14:261646,15:150127,16:344356,17:275160,18:237473,19:171932


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068969.2:Rpl32-ps:processed_pseudogene:506
samples:
,0:27940,1:15073,2:104782,3:82429,4:22711,5:26773,6:9122,7:3428,8:7159,9:7178,10:12205,11:4353,12:919,13:1475,14:2873,15:880,16:2538,17:2929,18:2258,19:1532


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027787.14:Nmd3:protein_coding:9135
samples:
,0:136756,1:79818,2:244188,3:130571,4:76526,5:125310,6:1105727,7:213256,8:757693,9:420387,10:385840,11:335692,12:126989,13:87041,14:100794,15:49419,16:101366,17:79071,18:193332,19:82361


chrom: chr3
strand: +
right_annotated: ENSMUSG00000102525.1:Gm37784:processed_pseudogene:189
samples:
,0:2528,1:1405,2:41676,3:8490,4:1939,5:1849,6:2613,8:2016,9:610,10:621,14:2109,15:960,16:2850,17:590,18:629,19:1208


chrom: chr3
strand: -
right_annotated: ENSMUSG00000102666.1:Gm8599:processed_pseudogene:457
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000048304.8:Slitrk3:protein_coding:4848
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027792.11:Bche:protein_coding:6210
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000096400.2:Gm6098:processed_pseudogene:330
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027835.11:Pdcd10:protein_coding:1927
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027834.15:Serpini1:protein_coding:4091
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000034109.15:Golim4:protein_coding:5650
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000104448.1:Gm37256:lincRNA:566
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000103312.1:Gm6677:processed_pseudogene:441
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000102637.1:Gm8684:processed_pseudogene:1564
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000084370.3:Gm15442:processed_pseudogene:1527
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000070443.6:Gm10291:processed_pseudogene:999
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000037096.6:Gm9762:processed_pseudogene:444
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000062232.14:Rapgef2:protein_coding:7206
samples:
,0:26051,1:15405,2:121894,3:67034,4:101996,5:165411,6:1538259,7:245653,8:650120,9:269198,10:238328,11:1056232,12:105023,13:28272,14:142447,15:82195,16:137161,17:81191,18:137783,19:162783


chrom: chr3
strand: -
right_annotated: ENSMUSG00000061175.11:Fnip2:protein_coding:7299
samples:
,0:24279,1:16095,2:36047,3:18116,4:17697,5:32036,6:133315,7:30867,8:38774,9:23466,10:12689,11:107800,12:5570,13:2957,14:18918,15:11814,16:12779,17:18227,18:13103,19:5322


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027804.13:Ppid:protein_coding:1752
samples:
,0:75472,1:44854,2:269511,3:144132,4:59206,5:91284,6:1019530,7:247041,8:667053,9:544615,10:863231,11:1501406,12:124621,13:74597,14:101470,15:37055,16:98561,17:57286,18:81819,19:40241


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027809.14:Etfdh:protein_coding:2414
samples:
,0:73950,1:41773,2:707062,3:326302,4:165503,5:287193,6:787041,7:89913,8:448897,9:392536,10:558786,11:876186,12:86449,13:11791,14:70110,15:17174,16:58478,17:41625,18:44406,19:33293


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027811.9:4930579G24Rik:protein_coding:1970
samples:
,0:132158,1:84759,2:26421,3:22309,4:6704,5:12828,6:31400,7:14106,8:33543,9:37179,10:99504,11:86113,13:26522,15:684,16:6484,18:1250,19:7165


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027956.11:Tmem144:protein_coding:3081
samples:
,0:302110,1:175706,2:28279,3:16203,4:72236,5:141169,6:18973,7:4714,8:20697,9:18996,11:89,12:23813,14:1776,15:398,16:6062,17:426,18:2382


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027955.16:Fam198b:protein_coding:6787
samples:
,0:40616,1:26495,2:327068,3:136161,4:129337,5:211598,6:1948,7:1518,9:90,11:1190,14:31076,15:38783,16:16313,17:39913,18:32550,19:27099


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033981.14:Gria2:protein_coding:10486
samples:
,0:1095,1:663,2:299,3:1684,4:924,5:1100,6:12238,7:413,8:51,12:7164,13:40716,14:2433652,15:1498437,16:2506312,17:2796935,18:2334742,19:1567708


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028020.16:Glrb:protein_coding:3185
samples:
,0:848,1:449,2:11368,3:10992,4:9893,5:11012,6:185153,7:61787,8:27434,9:83323,10:3168,11:3103,13:1731,14:409866,15:269059,16:721588,17:623053,18:500448,19:313337


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103419.1:Gm29808:unprocessed_pseudogene:468
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000028019.9:Pdgfc:protein_coding:3521
samples:
,0:37166,1:20204,2:275331,3:128361,4:118728,5:200801,6:1175255,7:276245,8:436815,9:372115,10:907646,11:619620,12:18060,13:56576,14:23636,16:5723,17:18915,18:1273,19:6915


chrom: chr3
strand: -
right_annotated: ENSMUSG00000085106.1:Gm16000:antisense_RNA:447
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000028015.3:Ctso:protein_coding:3468
samples:
,0:45071,1:23169,2:255491,3:135442,4:199044,5:339708,6:611328,7:73462,8:128724,9:151312,10:467293,11:171561,12:10,13:90,14:418,15:16447,16:4547,18:29193,19:26826


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028005.13:Gucy1b3:protein_coding:3227
samples:
,0:3243,1:950,2:126668,3:61779,4:59336,5:116038,6:33496,7:3507,8:14257,9:9010,10:301411,11:57389,12:1073,14:51238,15:85545,16:150876,17:68128,18:122315,19:97043


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033910.13:Gucy1a3:protein_coding:4826
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000033900.13:Map9:protein_coding:6277
samples:
,0:18057,1:8512,2:58783,3:35007,4:53045,5:120319,6:1341669,7:272424,8:547474,9:552215,10:409611,11:912329,12:23367,13:49433,14:77383,15:125918,16:190633,17:140717,18:149555,19:139800


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033882.15:Rbm46:protein_coding:2499
samples:
,0:135457,1:83601,2:4217,3:15663,4:37788,5:75664,6:61318,7:2685,8:90,9:4087,10:6515,11:14441,12:26,13:26,18:100,19:92


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027998.11:Plrg1:protein_coding:1851
samples:
,0:127248,1:76667,2:310317,3:195414,4:96683,5:143116,6:748640,7:69288,8:419285,9:204588,10:372236,11:1036065,12:134389,13:33265,14:82009,15:57604,16:101997,17:135204,18:93695,19:91657


chrom: chr3
strand: +
right_annotated: ENSMUSG00000102137.1:Rpl28-ps2:processed_pseudogene:554
samples:
,0:32,2:281,3:170,4:47,5:54,6:17244,7:1268,8:3396,9:4634,10:2913,11:2070,12:954,13:870,15:50,16:20,18:713,19:50


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027996.13:Sfrp2:protein_coding:2003
samples:
,0:1005,1:1332,2:1293,3:9437,4:1607,5:562,6:647769,7:90903,8:208063,9:102933,10:25300,11:101978,12:3117,13:18701,16:5126,19:4344


chrom: chr3
strand: -
right_annotated: ENSMUSG00000097250.1:Gm26771:antisense_RNA:1082
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027995.10:Tlr2:protein_coding:3014
samples:
,0:1097,1:798,2:21034,3:20055,4:22671,5:20172,6:70872,7:6208,8:55595,9:42235,10:126091,11:116819,12:21699,19:1634


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033767.14:Tmem131l:protein_coding:5555
samples:
,0:450056,1:339440,2:235425,3:127263,4:66380,5:90746,6:195171,7:22870,8:48255,9:52129,10:2976,11:41509,12:16866,13:456,14:2582,15:9071,16:7421,17:22714,18:5922,19:3990


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033752.7:Mnd1:protein_coding:875
samples:
,0:6629,1:3374,2:15577,3:17200,4:4678,5:6878,6:26388,7:3910,8:1153,9:2767,12:9582,13:5666,16:2111,17:332


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027993.16:Trim2:protein_coding:8321
samples:
,0:4859,1:2090,2:231522,3:62628,4:315681,5:471221,6:2938758,7:425978,8:921829,9:413870,10:500693,11:615944,12:94405,13:134509,14:369853,15:322926,16:312739,17:436668,18:395178,19:322167


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104043.1:Gm6525:protein_coding:1029
samples:
,0:1716,1:673,2:10032,3:7244,4:2348,5:3494,6:58495,7:9424,8:19231,9:13434,10:2883,11:1281,12:536,13:134,14:250,15:400,16:996,17:50,18:50,19:1188


chrom: chr3
strand: -
right_annotated: ENSMUSG00000041842.15:Fhdc1:protein_coding:6061
samples:
,0:303131,1:206274,2:309660,3:74377,4:26816,5:31757,6:50207,7:3858,8:38547,9:31866,10:87709,12:9850,13:5847,14:16136,16:5597,17:21072


chrom: chr3
strand: -
right_annotated: ENSMUSG00000074513.9:Arfip1:protein_coding:2986
samples:
,0:35826,1:20928,2:440947,3:194035,4:139797,5:241583,6:932256,7:222575,8:332291,9:212165,10:258098,11:617415,12:28342,13:16534,14:175,15:15988,16:26604,17:7702,18:4628,19:11879


chrom: chr3
strand: -
right_annotated: ENSMUSG00000102805.5:Gm37240:protein_coding:2913
samples:
,0:29626,1:18608,2:355497,3:158087,4:114059,5:197272,6:618508,7:149627,8:225446,9:162143,10:213010,11:455791,12:31697,13:12834,15:13149,16:22287,17:5282,18:3890,19:9860


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028086.15:Fbxw7:protein_coding:5445
samples:
,0:162554,1:100964,2:166098,3:74584,4:73244,5:123317,6:621402,7:139999,8:280015,9:258891,10:45576,11:580213,12:79907,13:171,14:445741,15:423971,16:560684,17:628905,18:557499,19:355193


chrom: chr3
strand: -
right_annotated: ENSMUSG00000085527.1:Gm15535:sense_intronic:1519
samples:
,0:2897,1:1717,2:4838,3:1467,4:1498,5:2361,6:23198,7:1162,8:144,9:56,11:179,14:1213,15:7,17:609,18:9


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028085.12:Gatb:protein_coding:4272
samples:
,0:65598,1:37184,2:142105,3:79344,4:47376,5:76092,6:59147,7:22736,8:127511,9:12147,10:176934,11:363669,12:73120,13:1139,14:29659,15:19701,16:26401,17:47905,18:39088,19:30873


chrom: chr3
strand: -
right_annotated: ENSMUSG00000051000.17:Fam160a1:protein_coding:4460
samples:
,0:7434,1:4501,2:102429,3:55302,4:27063,5:40087,6:243410,7:18809,8:117056,9:28014,10:540,11:28003,12:52222,13:879,14:500,15:3862,16:168,18:1274,19:225


chrom: chr3
strand: -
right_annotated: ENSMUSG00000031286.6:Glt28d2:protein_coding:2732
samples:
,0:2058,1:2334,2:10492,3:6468,4:2080,5:2915,6:662252,7:106909,8:182647,9:178648,10:102893,11:879073,12:49441,15:50,16:100,17:100,18:169,19:150


chrom: chr3
strand: +
right_annotated: ENSMUSG00000044330.8:Gm9790:processed_pseudogene:288
samples:
,0:47107,1:28688,2:67422,3:50973,4:33747,5:62601,6:470045,7:98401,8:323612,9:278235,10:198144,11:186404,12:35728,13:21215,14:50829,15:21643,16:45359,17:31317,18:58989,19:31501


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028082.13:Sh3d19:protein_coding:6886
samples:
,0:48855,1:33349,2:209020,3:157939,4:592308,5:1258442,6:125092,7:26364,8:86458,9:93690,10:7248,11:65613,12:130190,13:7253,15:6046,16:9440,18:2296,19:1500


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028081.6:Rps3a1:protein_coding:977
samples:
,0:66957,1:36971,2:1135498,3:110232,4:41373,5:50190,6:1925122,7:733076,8:3355540,9:2520854,10:4549355,11:2916123,12:739104,13:516007,14:21699,15:19516,16:37130,17:23318,18:30082,19:25086


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028080.16:Lrba:protein_coding:11564
samples:
,0:81992,1:51519,2:281142,3:184944,4:339763,5:732199,6:891289,7:205737,8:346490,9:291676,10:43215,11:588946,12:101334,13:18596,14:16953,15:11343,16:10782,17:9328,18:2775,19:5998


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103759.1:Gm37288:processed_pseudogene:334
samples:
,0:1433,1:848,2:1898,3:346,4:641,5:1227,6:2228,7:650,8:1273,9:1294,10:1973,11:958,12:710,13:110,14:394,15:345,16:725,17:302,18:1168,19:638


chrom: chr3
strand: -
right_annotated: ENSMUSG00000094392.1:Gm3788:processed_pseudogene:136
samples:
,0:114883,1:68167,2:66116,3:40929,4:22794,5:30204,6:97928,7:32373,8:39521,9:33534,10:84274,11:24505,12:9159,13:9304,14:44695,15:13263,16:25983,17:41478,18:20038,19:18036


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028078.14:Dclk2:protein_coding:8734
samples:
,0:8785,1:4480,2:104009,3:38158,4:99707,5:155899,6:423265,7:72129,8:63912,9:97284,10:197491,11:75817,12:92144,13:19630,14:26490,15:40144,16:45568,17:6161,18:46493,19:37822


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104074.1:Gm37025:processed_pseudogene:829
samples:
,0:866,1:400,2:5818,3:4539,4:1498,5:2911,6:5710,7:1715,8:3198,9:3487,10:5520,11:3577,12:1332,13:107,14:1591,15:1032,16:1047,17:747,18:3463,19:443


chrom: chr3
strand: +
right_annotated: ENSMUSG00000041750.13:Cd1d2:polymorphic_pseudogene:1527
samples:
,0:150,1:250,2:16717,3:21393,4:2975,5:2716,6:89997,7:16507,8:57753,9:35546,10:73001,11:62465,12:14309,13:45048,15:300,16:400


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028076.12:Cd1d1:protein_coding:1946
samples:
,0:1636,1:1249,2:114049,3:75290,4:20362,5:17324,6:440136,7:55708,8:217094,9:183912,10:474020,11:501363,12:83984,13:121367,15:2208,16:3134


chrom: chr3
strand: -
right_annotated: ENSMUSG00000041734.15:Kirrel:protein_coding:7463
samples:
,0:12857,1:9606,2:150500,3:144349,4:123744,5:135692,6:70880,7:11432,8:9827,9:8512,10:418,11:225,14:2593,15:500,16:839,19:1189


chrom: chr3
strand: -
right_annotated: ENSMUSG00000074506.4:Gm10705:processed_pseudogene:461
samples:
,0:93546,1:55908,2:95418,3:63686,4:33079,5:51275,6:129381,7:35237,8:92997,9:82023,10:166463,11:179228,12:20221,13:17131,14:9835,15:4631,16:12739,17:14302,18:21310,19:18581


chrom: chr3
strand: +
right_annotated: ENSMUSG00000003382.18:Etv3:protein_coding:7004
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000041977.18:Arhgef11:protein_coding:6776
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000023084.11:Lrrc71:protein_coding:3988
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000028071.12:Sh2d2a:protein_coding:4758
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000004895.9:Prcc:protein_coding:2099
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000004897.16:Hdgf:protein_coding:2245
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000019710.13:Mrpl24:protein_coding:1557
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000004896.16:Rrnad1:protein_coding:3141
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000048039.8:Isg20l2:protein_coding:2893
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000004885.5:Crabp2:protein_coding:931
samples:
,0:399,1:303,2:78188,3:71066,4:3495,5:2842,6:266555,7:52088,8:98646,9:169831,10:2153341,11:1101635,12:57158,13:36968,19:342


chrom: chr3
strand: +
right_annotated: ENSMUSG00000004891.16:Nes:protein_coding:6126
samples:
,0:7354,1:4117,2:43773,3:27029,4:61343,5:90008,6:140935,7:41781,8:58404,9:71132,15:106,16:648,17:200,18:1963,19:594


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028069.16:Gpatch4:protein_coding:2247
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000028070.7:Naxe:protein_coding:908
samples:
,0:89157,1:52755,2:277134,3:167135,4:88929,5:127085,6:522036,7:107342,8:622261,9:331567,10:858103,11:502199,12:233416,13:99952,14:96200,15:50845,16:87413,17:104315,18:109244,19:76674


chrom: chr3
strand: -
right_annotated: ENSMUSG00000051036.12:Ttc24:protein_coding:2351
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000001419.17:Mef2d:protein_coding:5844
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000096935.5:1700113A16Rik:antisense_RNA:977
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000097280.1:AI849053:lincRNA:2658
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000097156.7:Gm3764:lincRNA:4626
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000103766.5:Gm38392:protein_coding:1303
samples:
,0:170390,1:113023,2:9356,3:7297,4:3990,5:4331,6:18689,7:3490,8:16630,9:7128,10:29760,11:14072,13:1568,14:391,15:339,16:877,18:392,19:348


chrom: chr3
strand: -
right_annotated: ENSMUSG00000010538.14:Tsacc:protein_coding:645
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000103574.1:Gm37116:processed_pseudogene:147
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000001416.13:Cct3:protein_coding:2275
samples:
,0:1229610,1:786552,2:1596084,3:994974,4:394233,5:614937,6:1454880,7:287398,8:1333450,9:1138136,10:1466481,11:3388941,12:921377,13:407995,14:393773,15:186226,16:360291,17:335871,18:429653,19:292325


chrom: chr3
strand: +
right_annotated: ENSMUSG00000001418.13:Glmp:protein_coding:4219
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000001420.13:Tmem79:protein_coding:2666
samples:
,0:21199,1:15332,2:8917,3:8101,4:4558,5:7430,6:42439,7:5846,8:83574,9:5602,10:374,11:92256,12:119629,13:44212,14:37,15:200,16:36,17:1587,18:3085,19:1166


chrom: chr3
strand: +
right_annotated: ENSMUSG00000001415.10:Smg5:protein_coding:4448
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000041423.16:Paqr6:protein_coding:1675
samples:
,0:4214,1:1781,2:48941,3:27929,4:7114,5:7215,6:88051,7:2545,8:38136,9:32203,12:49332,13:25041,17:248,18:1273,19:103


chrom: chr3
strand: +
right_annotated: ENSMUSG00000078691.3:Gm6821:unprocessed_pseudogene:542
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000028066.15:Pmf1:protein_coding:1007
samples:
,0:26210,1:16365,2:98487,3:102348,4:20698,5:26288,6:264591,7:42109,8:89939,9:85719,10:171834,11:110433,12:34056,13:1169,14:5249,15:1276,16:5254,17:3307,18:1499,19:2956


chrom: chr3
strand: -
right_annotated: ENSMUSG00000050144.13:Slc25a44:protein_coding:3578
samples:
,0:63140,1:45143,2:193519,3:134050,4:127396,5:243954,6:729803,7:64425,8:191159,9:186854,10:259376,11:208240,12:221597,13:49280,14:441216,15:175708,16:346437,17:347607,18:313003,19:230879


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106568.1:Gm42814:processed_pseudogene:460
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000028064.17:Sema4a:protein_coding:3434
samples:
,0:122442,1:90982,2:41021,3:32361,4:33735,5:28185,6:1169,10:2,14:178558,15:107874,16:135772,17:208423,18:78640,19:55680


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103304.1:Gm5979:unprocessed_pseudogene:571
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000028063.15:Lmna:protein_coding:3345
samples:
,0:41343,1:28758,2:310940,3:186578,4:113392,5:119198,6:5488461,7:619708,8:2474706,9:1762260,10:319134,11:534735,12:67698,13:68740,14:104084,15:57122,16:204988,17:140442,18:274088,19:189719


chrom: chr3
strand: +
right_annotated: ENSMUSG00000074480.4:Mex3a:protein_coding:5778
samples:
,0:17957,1:8919,2:318039,3:128191,4:50234,5:108953,6:929215,7:118544,8:284420,9:246571,10:608400,11:1200975,12:190336,13:119156,15:2148,16:343,18:1040,19:380


chrom: chr3
strand: -
right_annotated: ENSMUSG00000008601.12:Rab25:protein_coding:1081
samples:
,1:80,2:2442,3:1149,4:600,5:1295,6:723005,7:85895,8:445867,9:385049,10:913046,11:398619,12:191613,13:101312


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028062.15:Lamtor2:protein_coding:734
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000008604.11:Ubqln4:protein_coding:3330
samples:
,0:134672,1:91819,2:419569,3:204262,4:133516,5:242179,6:148967,7:24402,8:179763,9:123444,10:17253,11:661358,12:76818,13:102511,14:43058,15:45530,16:43741,17:42219,18:48589,19:49942


chrom: chr3
strand: -
right_annotated: ENSMUSG00000074479.3:Gm10704:processed_pseudogene:730
samples:
,0:154396,1:93751,2:211241,3:168914,4:82796,5:118269,6:423581,7:95530,8:341727,9:298644,10:801090,11:598071,12:148899,13:38945,14:31108,15:28322,16:36404,17:31780,18:34872,19:35472


chrom: chr3
strand: +
right_annotated: ENSMUSG00000041355.13:Ssr2:protein_coding:1292
samples:
,0:180151,1:115718,2:806840,3:606194,4:470160,5:893192,6:3372342,7:637407,8:3036327,9:2138417,10:6012958,11:4067960,12:587149,13:395810,14:220572,15:148873,16:258864,17:289822,18:263155,19:206415


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028059.15:Arhgef2:protein_coding:5644
samples:
,0:1077766,1:747034,2:213976,3:114051,4:72741,5:93534,6:584699,7:52011,8:235507,9:143479,10:59559,11:121945,12:115370,13:42252,14:357318,15:213195,16:328104,17:296682,18:225653,19:167558


chrom: chr3
strand: -
right_annotated: ENSMUSG00000093390.1:Gm20652:antisense_RNA:383
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000105512.1:Gm43714:antisense_RNA:1204
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000028060.14:2810403A07Rik:protein_coding:2981
samples:
,0:109596,1:66854,2:434237,3:200732,4:183524,5:311890,6:821779,7:103599,8:282067,9:96496,10:547855,11:371538,12:96743,13:41763,14:128841,15:44300,16:130470,17:127050,18:196108,19:70730


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028057.14:Rit1:protein_coding:1204
samples:
,0:54460,1:38423,2:156542,3:80225,4:71488,5:114800,6:423975,7:57494,8:176552,9:164655,10:437918,11:482030,12:86657,13:97229,14:96787,15:59619,16:78781,17:72061,18:32412,19:41811


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068923.14:Syt11:protein_coding:5160
samples:
,0:205485,1:126824,2:125892,3:67005,4:49826,5:107146,6:676121,7:94418,8:249044,9:197528,10:193311,11:237077,12:41201,13:67465,14:2655927,15:1548494,16:2587840,17:2830244,18:3195718,19:2212498


chrom: chr3
strand: +
right_annotated: ENSMUSG00000078684.8:5830417I10Rik:unprocessed_pseudogene:6190
samples:
,0:281367,1:201580,2:339928,3:201557,4:145487,5:261680,6:136085,7:15375,8:64678,9:62788,10:1,11:69028,12:29927,13:27881,14:43747,15:45218,16:69520,17:71454,18:42934,19:38505


chrom: chr3
strand: -
right_annotated: ENSMUSG00000098912.7:1500004A13Rik:processed_transcript:11638
samples:
,0:148044,1:103823,2:191516,3:113471,4:76696,5:135005,6:122516,7:11420,8:71847,9:50592,11:22314,12:11009,13:43859,14:206582,15:137540,16:289539,17:299766,18:417077,19:262335


chrom: chr3
strand: +
right_annotated: ENSMUSG00000054199.17:Gon4l:protein_coding:7564
samples:
,0:323064,1:223480,2:413508,3:233996,4:174790,5:324863,6:361441,7:40460,8:182183,9:129466,10:148722,11:130900,12:50097,13:137769,14:92303,15:60576,16:90405,17:115151,18:104249,19:66421


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106218.1:Gm43713:antisense_RNA:1896
samples:
,0:7478,1:5833,2:13288,3:7093,4:5846,5:10007,6:12429,7:3271,8:6636,9:4319,10:28,11:5463,12:141,13:1718,14:9055,15:4546,16:15798,17:12366,18:26805,19:18437


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068922.14:Msto1:protein_coding:2289
samples:
,0:439829,1:303041,2:127028,3:90549,4:77602,5:151034,6:267623,7:21490,8:155155,9:99096,10:563605,11:276227,12:73339,13:83145,14:44572,15:41459,16:77310,17:50411,18:56119,19:31104


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068921.14:Dap3:protein_coding:4981
samples:
,0:574126,1:415474,2:423563,3:300493,4:216116,5:386384,6:467178,7:92434,8:254094,9:455590,10:1136946,11:734780,12:209722,13:225560,14:235707,15:116359,16:208971,17:219010,18:284907,19:202115


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028053.13:Ash1l:protein_coding:11644
samples:
,0:155399,1:91938,2:523078,3:317838,4:296965,5:559459,6:1562717,7:370120,8:660067,9:545588,10:744937,11:1149253,12:41806,13:9264,14:158622,15:150522,16:237089,17:168765,18:199525,19:164202


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105204.1:Gm43738:protein_coding:2635
samples:
,0:85301,1:54406,2:908499,3:232557,4:28363,5:37489,6:661230,7:101721,8:375499,9:343920,10:851184,11:883853,12:145092,13:41104,14:126197,15:120824,16:184909,17:136646,18:145191,19:104797


chrom: chr3
strand: -
right_annotated: ENSMUSG00000041263.14:Rusc1:protein_coding:3802
samples:
,0:11779,1:8196,2:75276,3:47156,4:10696,5:12450,6:29822,7:9922,8:16227,9:1476,10:127059,11:103617,12:41454,13:1978,14:143074,15:147948,16:238580,17:154170,18:149326,19:122379


chrom: chr3
strand: -
right_annotated: ENSMUSG00000059743.12:Fdps:protein_coding:1453
samples:
,0:102803,1:61921,2:999347,3:238082,4:25255,5:35450,6:763925,7:115393,8:434591,9:395287,10:930250,11:961799,12:135259,13:47442,14:76910,15:59743,16:87700,17:81382,18:82875,19:58061


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028051.10:Hcn3:protein_coding:4002
samples:
,0:2828,1:2184,2:29502,3:21058,4:1683,5:2618,6:27289,7:2818,8:2187,13:891,14:6318,15:1919,16:8141,18:12225,19:2024


chrom: chr3
strand: +
right_annotated: ENSMUSG00000068917.12:Clk2:protein_coding:2157
samples:
,0:97308,1:64284,2:267496,3:137449,4:81982,5:146552,6:332107,7:60556,8:108433,9:44839,10:168,11:205053,12:89992,13:52412,14:10348,15:2925,16:22362,17:10891,18:4354,19:1348


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028049.15:Scamp3:protein_coding:1492
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000086718.1:Gm16069:antisense_RNA:545
samples:
,0:16715,1:10546,2:51488,3:34894,4:22376,5:35789,6:64581,7:8580,8:43207,9:27464,10:142170,11:78725,12:5559,13:24320,14:33392,15:17241,16:24483,17:31381,18:17378,19:9683


chrom: chr3
strand: +
right_annotated: ENSMUSG00000032657.15:Fam189b:protein_coding:3087
samples:
,0:5904,1:3194,2:89980,3:53396,4:25546,5:34220,6:153370,7:25114,8:67642,9:30599,10:36439,11:86473,12:28556,13:23109,14:63502,15:40589,16:61175,17:28267,18:64501,19:39089


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028048.11:Gba:protein_coding:1950
samples:
,0:35291,1:22367,2:213237,3:141139,4:150260,5:286604,6:617964,7:56978,8:495803,9:304467,10:762512,11:843248,12:123422,13:179096,14:58441,15:55495,16:74379,17:81335,18:76879,19:68436


chrom: chr3
strand: -
right_annotated: ENSMUSG00000064068.13:Mtx1:protein_coding:1617
samples:
,0:490300,1:336576,2:163673,3:117231,4:63288,5:103211,6:315575,7:56156,8:163355,9:174992,10:161731,11:158117,12:69498,13:66663,14:46791,15:35923,16:100603,17:64424,18:98824,19:91074


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105692.1:Gm43737:TEC:2740
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000028047.11:Thbs3:protein_coding:3190
samples:
,0:75614,1:42965,2:25200,3:24624,4:11695,5:11502,6:58193,7:7921,8:33648,9:24292,10:159410,11:94791,12:233894,13:19549,14:1960,18:1998,19:4014


chrom: chr3
strand: +
right_annotated: ENSMUSG00000042784.9:Muc1:protein_coding:2242
samples:
,0:64858,1:53047,2:3744,3:3374,4:5931,5:4515,6:35780,7:1321,8:7016,9:289,11:1258,12:26109,13:43,18:223


chrom: chr3
strand: -
right_annotated: ENSMUSG00000042766.17:Trim46:protein_coding:3515
samples:
,0:63864,1:46404,2:13602,3:4413,4:3075,5:3826,6:30263,7:6588,8:11960,9:12106,10:52576,11:27284,12:1735,13:8597,14:78247,15:68991,16:139387,17:97262,18:81549,19:63918


chrom: chr3
strand: +
right_annotated: ENSMUSG00000042747.12:Krtcap2:protein_coding:1250
samples:
,0:33495,1:21327,2:247497,3:166548,4:52985,5:68103,6:808814,7:199317,8:599874,9:495038,10:1094038,11:429440,12:86356,13:84153,14:78794,15:49464,16:53821,17:71977,18:51696,19:33449


chrom: chr3
strand: +
right_annotated: ENSMUSG00000042737.9:Dpm3:protein_coding:827
samples:
,0:6540,1:3544,2:91448,3:61394,4:31066,5:32306,6:196033,7:32737,8:84273,9:98939,10:352869,11:71965,12:20530,13:16883,14:13867,15:7787,16:15607,17:13201,18:19185,19:19633


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027953.13:Slc50a1:protein_coding:1022
samples:
,0:5775,1:3484,2:181442,3:111568,4:43958,5:57308,6:493625,7:91359,8:366251,9:310435,10:864274,11:595038,12:116191,13:50362,14:71466,15:53909,16:99502,17:52385,18:99428,19:57888


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027954.9:Efna1:protein_coding:1830
samples:
,0:839,1:1246,2:88371,3:33603,4:22067,5:17966,6:1964979,7:281587,8:1020050,9:634271,10:617261,11:671648,12:286561,13:95140,15:8577,16:14426,17:7743,18:28843,19:11221


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028039.11:Efna3:protein_coding:2363
samples:
,0:9679,1:6083,2:2294,3:1049,4:400,5:100,6:22525,7:2032,8:4141,9:5410,12:834,14:49160,15:35122,16:34256,17:80591,18:39517,19:40359


chrom: chr3
strand: +
right_annotated: ENSMUSG00000086389.1:Gm15998:antisense_RNA:1844
samples:
,0:3671,1:2143,2:1420,3:543,5:150,6:7102,7:2653,8:959,9:6603,10:8,12:5888,14:13406,15:8609,16:7732,17:22029,18:9592,19:11166


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028040.7:Efna4:protein_coding:1599
samples:
,0:1614,1:1095,2:39809,3:19233,4:7354,5:8723,6:158727,7:11004,8:59458,9:46325,10:119927,11:56794,12:11722,13:55359,18:1371


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097004.1:4731419I09Rik:antisense_RNA:2820
samples:
,0:9945,1:7329,2:64618,3:29807,4:26208,5:25470,6:50208,7:869,8:18645,9:5756,10:14987,11:1415,12:13610,13:966,14:34126,15:24512,16:56751,17:43595,18:43699,19:53866


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028041.17:Adam15:protein_coding:2975
samples:
,0:40118,1:26635,2:225052,3:109047,4:94617,5:92955,6:141281,7:5738,8:38883,9:10634,10:371,11:9500,12:62097,13:4838,14:117201,15:85781,16:183434,17:152160,18:170510,19:174929


chrom: chr3
strand: -
right_annotated: ENSMUSG00000042672.15:Dcst1:protein_coding:2342
samples:
,0:242736,1:161101,2:868,3:962,4:443,5:653,6:13012,7:1563,8:22883,9:2468,13:664,14:2909,15:1190,16:2767,17:385,18:3069,19:1375


chrom: chr3
strand: +
right_annotated: ENSMUSG00000074467.4:Gm10702:pseudogene:1268
samples:
,0:30050,1:17100,2:346,4:99,5:290,6:8916,7:3014,8:2974,9:1361,14:250,15:152,16:139,17:700,18:747,19:1960


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028042.15:Zbtb7b:protein_coding:4777
samples:
,0:17522,1:10264,2:186793,3:89271,4:65995,5:126869,6:101121,7:14620,8:695,9:18575,10:274,11:56880,14:2564,19:392


chrom: chr3
strand: +
right_annotated: ENSMUSG00000074466.12:Gm15417:antisense_RNA:925
samples:
,0:1076,1:859,2:9799,3:4798,4:2188,5:6014,6:61825,7:9352,8:29839,9:27601,10:6987,11:10133,12:10584,13:1490,16:300,18:350


chrom: chr3
strand: -
right_annotated: ENSMUSG00000078173.3:Lenep:protein_coding:1806
samples:
,0:4402,1:3568,2:26520,3:13545,4:10850,5:20090,6:114730,7:9588,8:38881,9:5108,10:78,11:12308,12:39893,13:51069,14:10135,15:9274,16:10013,17:18552,18:11193,19:12393


chrom: chr3
strand: -
right_annotated: ENSMUSG00000042642.13:Flad1:protein_coding:3902
samples:
,0:137791,1:97927,2:142531,3:83687,4:63892,5:99588,6:330710,7:30308,8:147037,9:101486,10:99629,11:391029,12:209575,13:234547,14:119232,15:61008,16:83420,17:145124,18:95188,19:82614


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028044.6:Cks1b:protein_coding:1080
samples:
,0:14710,1:7586,2:126217,3:121424,4:36182,5:52212,6:425552,7:93976,8:281523,9:215458,10:762967,11:414331,12:66332,13:69218,14:2202,15:1167,16:677,18:1050,19:1575


chrom: chr3
strand: +
right_annotated: ENSMUSG00000042626.13:Shc1:protein_coding:3812
samples:
,0:44782,1:31409,2:314648,3:268378,4:137727,5:203169,6:453860,7:33186,8:43641,9:38230,10:151132,11:90,12:31820,13:57204,15:4497,16:11139,17:8696,18:10781,19:700


chrom: chr3
strand: +
right_annotated: ENSMUSG00000047824.13:Pygo2:protein_coding:3380
samples:
,0:84034,1:66499,2:283604,3:155201,4:104083,5:181431,6:281305,7:39676,8:137754,9:89755,10:225616,11:114998,12:76259,13:810,14:21363,15:28607,16:31514,17:36335,18:23013,19:40256


chrom: chr3
strand: +
right_annotated: ENSMUSG00000042613.9:Pbxip1:protein_coding:4479
samples:
,0:47460,1:33588,2:444582,3:301844,4:169348,5:226204,6:640459,7:96964,8:257408,9:239381,10:204904,11:445508,12:72204,13:139367,16:94,18:57


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027952.16:Pmvk:protein_coding:1713
samples:
,0:28946,1:18957,2:131982,3:44674,4:19863,5:34341,6:723069,7:91176,8:627486,9:360191,10:574881,11:711304,12:68099,13:68674,14:42550,15:26575,16:69615,17:79591,18:61401,19:31059


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027951.16:Adar:protein_coding:6000
samples:
,0:35382,1:21256,2:342722,3:181343,4:122298,5:241548,6:334054,7:31822,8:128331,9:89452,10:136689,11:170958,12:159438,13:16237,14:165161,15:166892,16:199516,17:172753,18:142569,19:160654


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027950.7:Chrnb2:protein_coding:8344
samples:
,0:34101,1:20165,2:86748,3:48621,4:31862,5:61806,6:237942,7:29713,8:109505,9:65869,10:134364,11:208468,12:62771,13:26992,14:115585,15:143173,16:241578,17:224192,18:179245,19:131288


chrom: chr3
strand: -
right_annotated: ENSMUSG00000042579.2:4632404H12Rik:lincRNA:5730
samples:
,0:16052,1:10456,2:71539,3:32597,4:23806,5:50651,6:111395,7:11823,8:35048,9:29921,12:9789,13:4941,14:3170,15:12160,16:30106,17:30039,18:31718,19:34724


chrom: chr3
strand: +
right_annotated: ENSMUSG00000042572.12:Ube2q1:protein_coding:3329
samples:
,0:190636,1:123011,2:351335,3:167362,4:126080,5:216652,6:581765,7:63908,8:49958,9:103642,10:515730,11:17466,12:78501,13:61301,14:33072,15:22471,16:54326,17:17985,18:25445,19:25917


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027947.11:Il6ra:protein_coding:8642
samples:
,0:8701,1:5399,2:22161,3:16885,4:43725,5:60895,6:1637,7:127,8:1511,9:6440,10:38,11:53,15:4565,16:4292,17:7960,18:27456,19:13086


chrom: chr3
strand: -
right_annotated: ENSMUSG00000060671.12:Atp8b2:protein_coding:6050
samples:
,0:139203,1:86265,2:420588,3:262146,4:594429,5:1262637,6:191719,7:22944,8:36829,9:24265,10:308322,11:135488,12:1304,13:2285,14:17188,15:31755,16:45317,17:24546,18:82747,19:31533


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027944.13:Hax1:protein_coding:1204
samples:
,0:86847,1:52274,2:174089,3:84967,4:42208,5:67797,6:220586,7:35016,8:184758,9:135133,10:112694,11:243458,12:25545,13:28842,14:35250,15:26842,16:36752,17:54348,18:37639,19:24749


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105552.1:Gm19710:lincRNA:998
samples:
,0:51359,1:32537,2:53707,3:28610,4:25339,5:49940,6:89955,7:11467,8:38142,9:29827,10:30674,11:41930,12:24372,13:6962,14:8511,15:6083,16:12683,17:14059,18:13098,19:12012


chrom: chr3
strand: -
right_annotated: ENSMUSG00000042520.16:Ubap2l:protein_coding:4935
samples:
,0:661756,1:426624,2:844860,3:465684,4:425468,5:767972,6:1935983,7:236173,8:638439,9:452082,10:700965,11:653414,12:353800,13:182235,14:178647,15:118321,16:256121,17:251944,18:262702,19:251230


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027942.16:4933434E20Rik:protein_coding:6651
samples:
,0:418818,1:269925,2:421733,3:185312,4:122785,5:190185,6:4420084,7:699342,8:2798865,9:1884254,10:1686179,11:2503543,12:1198041,13:417545,14:195313,15:118162,16:177810,17:182035,18:139819,19:124356


chrom: chr3
strand: +
right_annotated: ENSMUSG00000090005.1:Gm16540:sense_intronic:426
samples:
,0:65,2:766,3:478,4:230,5:189,6:2468,7:878,8:2193,9:4235,10:2711,11:7730,12:563,13:1387,15:50,16:209,18:423


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027940.18:Tpm3:protein_coding:3323
samples:
,0:107109,1:62711,2:909331,3:269815,4:281650,5:511276,6:1287465,7:178186,8:825435,9:476576,10:519237,11:634122,12:421990,13:135203,14:262284,15:137624,16:293895,17:307926,18:247101,19:180469


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027939.11:Nup210l:protein_coding:5720
samples:
,0:562931,1:368124,2:11201,3:6405,4:6328,5:17669,6:13780,7:1069,8:1303,9:1286,14:1583,15:146,16:707,18:121,19:679


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104649.1:Gm43712:unprocessed_pseudogene:291
samples:
,0:9051,1:5215,2:90488,3:73368,4:26803,5:29781,6:121062,7:25594,8:50294,9:43982,10:139478,11:105744,12:12582,13:10692,14:12744,15:8050,16:12329,17:10451,18:11746,19:8932


chrom: chr3
strand: -
right_annotated: ENSMUSG00000090733.6:Rps27:protein_coding:462
samples:
,0:29535,1:21584,2:165163,3:130908,4:51349,5:61042,6:323148,7:104615,8:237639,9:212709,10:436548,11:188634,12:37820,13:22992,14:4474,15:3499,16:5088,17:5193,18:12624,19:5963


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027935.14:Rab13:protein_coding:1651
samples:
,0:20972,1:14540,2:142438,3:110719,4:80548,5:137166,6:164164,7:32657,8:188773,9:102510,10:143163,11:140963,12:58880,13:23195,14:6605,15:1226,16:2439,18:97,19:1466


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027937.15:Jtb:protein_coding:1187
samples:
,0:39315,1:19476,2:286341,3:154175,4:99282,5:142183,6:658161,7:84306,8:290899,9:275415,10:764663,11:240215,12:143557,13:32512,14:119758,15:66401,16:113731,17:117454,18:184184,19:111283


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027938.11:Creb3l4:protein_coding:1679
samples:
,0:806348,1:514644,2:17121,3:10385,4:9151,5:14870,6:257687,7:16880,8:48289,9:187961,10:606186,11:383805,12:139847,13:66762


chrom: chr3
strand: +
right_annotated: ENSMUSG00000052310.9:Slc39a1:protein_coding:2364
samples:
,0:68213,1:39478,2:462921,3:320406,4:311372,5:460387,6:2508919,7:316957,8:457284,9:364042,10:29740,11:149608,12:33953,13:39755,14:66262,15:36249,16:67194,17:48536,18:113719,19:54925


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027936.18:Crtc2:protein_coding:2747
samples:
,0:48173,1:31183,2:173222,3:94504,4:98529,5:162680,6:156657,7:21225,8:14803,9:52822,10:146743,11:76127,12:9787,13:20070,14:12064,15:4184,16:16509,17:6287,18:38989,19:20161


chrom: chr3
strand: +
right_annotated: ENSMUSG00000042404.16:Dennd4b:protein_coding:5800
samples:
,0:112110,1:82339,2:118674,3:63497,4:40656,5:52493,6:34280,7:5874,8:1150,9:1134,13:11026,14:16680,15:26162,16:24077,17:44120,18:21727,19:13017


chrom: chr3
strand: +
right_annotated: ENSMUSG00000042390.9:Gatad2b:protein_coding:7701
samples:
,0:140403,1:87738,2:452918,3:234259,4:185062,5:373656,6:1783412,7:252437,8:532753,9:393358,10:239257,11:509847,12:82457,13:58880,14:80252,15:33641,16:74234,17:56388,18:70399,19:58683


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027932.14:Slc27a3:protein_coding:2259
samples:
,0:39926,1:27588,2:227719,3:137876,4:93431,5:172828,6:41965,7:8353,8:51341,9:18958,10:94771,11:8649,12:56388,13:28083,15:321,19:1375


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027933.11:Ints3:protein_coding:4466
samples:
,0:115099,1:78515,2:546528,3:314262,4:373169,5:760405,6:93106,7:9246,8:48959,9:13588,10:29002,11:38079,12:14308,13:112824,14:53723,15:37441,16:79977,17:23373,18:57714,19:68295


chrom: chr3
strand: +
right_annotated: ENSMUSG00000001016.12:Ilf2:protein_coding:2027
samples:
,0:179398,1:111264,2:442981,3:300343,4:160882,5:256914,6:1510245,7:240708,8:942523,9:823808,10:1549921,11:2308934,12:250417,13:303282,14:194735,15:121690,16:226148,17:237769,18:300193,19:186741


chrom: chr3
strand: -
right_annotated: ENSMUSG00000001018.15:Snapin:protein_coding:1928
samples:
,0:120679,1:81690,2:448706,3:284319,4:142863,5:265568,6:1372009,7:175572,8:668086,9:435250,10:846281,11:767636,12:267802,13:75847,14:87560,15:74808,16:61268,17:162273,18:148910,19:94993


chrom: chr3
strand: -
right_annotated: ENSMUSG00000001017.15:Chtop:protein_coding:3304
samples:
,0:274835,1:172159,2:722202,3:393681,4:195254,5:326930,6:1283892,7:149882,8:624223,9:303378,10:761486,11:257286,12:774878,13:177610,14:218287,15:152284,16:192395,17:226960,18:243031,19:154744


chrom: chr3
strand: -
right_annotated: ENSMUSG00000044080.9:S100a1:protein_coding:694
samples:
,0:19095,1:7716,2:276891,3:126341,4:48121,5:47682,6:15688791,7:5146814,8:10023855,9:8438014,10:4032679,11:3025045,12:2795564,13:1875482,14:276,19:150


chrom: chr3
strand: +
right_annotated: ENSMUSG00000042312.9:S100a13:protein_coding:715
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000074457.10:S100a16:protein_coding:1439
samples:
,0:5392,1:2050,2:199433,3:107937,4:63874,5:54511,6:709122,7:120700,8:536048,9:423828,10:249594,11:1699,12:29353,13:11029,15:33,16:1800


chrom: chr3
strand: +
right_annotated: ENSMUSG00000001025.8:S100a6:protein_coding:809
samples:
,0:10274,1:5803,2:1258580,3:281180,4:41264,5:28254,6:32649,7:13611,8:39596,9:26995,10:191044,11:102289,12:8544,13:26432,16:1993,18:781,19:300


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105644.1:Gm19739:processed_pseudogene:153
samples:
,0:300,1:199,2:6353,3:5391,4:1075,5:1496,6:1633,7:370,8:1082,9:1210,10:1954,11:2321,12:247,14:281,15:424,16:411,17:212,18:342,19:248


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106117.1:Gm5284:processed_pseudogene:903
samples:
,0:178,1:233,2:80,4:66,5:48,6:1135,7:13,8:650,9:226,10:116,11:414,12:465,15:100,16:135,17:117,18:251,19:358


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105892.1:Gm35013:processed_pseudogene:832
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000106257.1:Gm9023:unprocessed_pseudogene:1038
samples:
,0:200,1:150,2:2203,3:1728,4:1233,5:2174,6:485,8:100,10:179,11:76,14:250,15:500,16:750,17:950,18:1296,19:1485


chrom: chr3
strand: +
right_annotated: ENSMUSG00000086377.1:4930529C04Rik:processed_pseudogene:3534
samples:
,0:19138,1:11644,2:4775,3:2455,4:1398,5:2548,6:3921,7:145,8:1377,9:443,10:152,11:297,12:103,13:329,14:2274,15:1189,16:7604,17:238,18:1331,19:508


chrom: chr3
strand: +
right_annotated: ENSMUSG00000082826.1:Mif-ps3:processed_pseudogene:345
samples:
,0:35,1:254,2:718,3:683,4:359,5:474,6:17821,7:3534,8:4435,9:3485,10:3497,11:2316,12:760,13:1052,14:4350,15:2911,16:5636,17:3960,18:5102,19:3435


chrom: chr3
strand: -
right_annotated: ENSMUSG00000043165.7:Lor:protein_coding:1779
samples:
,0:541,1:273,2:3430,3:642,4:279,5:496,6:1426,8:3929,9:900,10:3450,11:348,12:6041,13:450,14:8785,15:8065,16:14544,17:15961,18:8198,19:13034


chrom: chr3
strand: -
right_annotated: ENSMUSG00000103286.1:Gm5850:processed_pseudogene:1206
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000104028.1:Gm5851:processed_pseudogene:1204
samples:
,0:4575,1:3591,2:63996,3:46167,4:18660,5:19957,6:78071,7:16513,8:95215,9:67080,10:182014,11:156965,12:16657,13:15156,14:9698,15:6056,16:7883,17:6861,18:8086,19:6723


chrom: chr3
strand: -
right_annotated: ENSMUSG00000042165.8:Gm9774:protein_coding:1392
samples:
,0:200697,1:126515,2:258846,3:121163,4:158909,5:309454,6:333724,7:32521,8:163913,9:148483,10:166017,11:83524,12:130421,13:21359,14:102875,15:53858,16:83735,17:103206,18:182894,19:107409


chrom: chr3
strand: +
right_annotated: ENSMUSG00000091421.3:Gm4202:processed_pseudogene:733
samples:
,0:243307,1:160987,2:535577,3:287413,4:257161,5:458221,6:1578813,7:205583,8:1154555,9:789516,10:1619777,11:2669038,12:236137,13:141032,14:1777107,15:1040656,16:1875424,17:2066617,18:1800383,19:1747220


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104298.1:Gm38040:unprocessed_pseudogene:225
samples:
,0:283,1:193,2:344,3:132,4:221,5:446,6:843,7:183,8:71,9:573,10:163,11:468,12:90,13:313,14:998,15:1150,16:1482,17:1452,18:1680,19:600


chrom: chr3
strand: +
right_annotated: ENSMUSG00000102609.1:Gm18432:processed_pseudogene:1451
samples:
,0:3643,1:2514,2:7001,3:5374,4:2166,5:3695,6:160,8:307,9:482,10:243,11:76,14:1248,15:1099,16:1643,17:1941,18:3457,19:1959


chrom: chr3
strand: +
right_annotated: ENSMUSG00000081640.1:Rplp0-ps1:processed_pseudogene:933
samples:
,0:30402,1:27967,2:91424,3:124769,4:49563,5:53756,6:152000,7:42041,8:94814,9:80068,10:355379,11:177016,12:2614,13:1801,14:4477,15:4343,16:5983,17:4243,18:4549,19:4226


chrom: chr3
strand: -
right_annotated: ENSMUSG00000057829.5:Gm5278:processed_pseudogene:552
samples:
,0:100,2:751,3:266,4:176,5:412,6:12791,7:3773,8:9268,9:8743,10:17579,11:11703,12:935,13:1172,14:370,15:379,16:786,17:548,18:783,19:620


chrom: chr3
strand: +
right_annotated: ENSMUSG00000052415.5:Tchh:protein_coding:5823
samples:
,0:10214,1:5084,2:5871,3:16142,4:16702,5:19639,6:35960,7:6247,8:10103,9:26440,14:2835,15:7136,16:19787,17:9597,18:20613,19:14192


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027907.4:S100a11:protein_coding:511
samples:
,0:6501,1:3839,2:116062,3:82978,4:100579,5:136824,6:1787956,7:540566,8:1369121,9:1129159,10:1121631,11:622328,12:63683,13:40579


chrom: chr3
strand: +
right_annotated: ENSMUSG00000041959.14:S100a10:protein_coding:802
samples:
,0:13563,1:7349,2:563463,3:286119,4:236109,5:357655,6:987829,7:153005,8:792418,9:638258,10:733748,11:344144,12:98259,13:45607,14:14406,15:5404,16:12880,17:15883,18:18163,19:6653


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028145.9:Them4:protein_coding:1781
samples:
,0:52120,1:38419,2:40513,3:16677,4:11331,5:16372,6:170165,7:51255,8:148832,9:57389,10:191592,11:115740,14:46447,15:21969,16:48951,17:45244,18:73381,19:66601


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105506.1:Gm43743:transcribed_processed_pseudogene:828
samples:
,2:555,3:502,4:54,5:544,6:197924,7:86230,8:90552,9:71033,10:100403,11:163184,12:18309,13:12817,14:50,16:129,17:133,18:167,19:98


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028150.14:Rorc:protein_coding:2885
samples:
,0:6097,1:2531,2:89089,3:27360,4:124582,5:226871,6:424195,7:34233,8:154104,9:235948,10:6353,11:464293,12:2772,16:835,17:1309,18:30


chrom: chr3
strand: +
right_annotated: ENSMUSG00000044505.5:Lingo4:protein_coding:3645
samples:
,0:300,1:85,2:467,3:149,4:4275,5:8266,6:110621,7:13088,8:36337,9:10502,10:64,11:19914,12:1795,13:102,17:438,18:191,19:302


chrom: chr3
strand: -
right_annotated: ENSMUSG00000097515.2:1700040D17Rik:lincRNA:998
samples:
,0:22350,1:13367,2:975,3:5,4:680,5:1140,6:31684,7:3074,8:90,9:8003,10:14857,12:4089,15:2368,16:997,17:2794,18:1000,19:1897


chrom: chr3
strand: +
right_annotated: ENSMUSG00000041912.12:Tdrkh:protein_coding:6142
samples:
,0:1584871,1:1068702,2:35539,3:18901,4:19575,5:33544,6:253250,7:40659,8:153230,9:64092,10:278762,11:143916,12:3920,13:9513,14:42464,15:42646,16:104216,17:98620,18:38360,19:24825


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028141.11:Oaz3:protein_coding:1213
samples:
,0:4645669,1:3134499,2:36859,3:21877,4:13737,5:25108,6:52154,7:2663,8:12404,9:14009,10:10020,11:16368,12:9860,13:7,14:6066,15:4307,16:9165,17:7860,18:4244,19:7987


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028140.13:Mrpl9:protein_coding:2592
samples:
,0:60944,1:36720,2:229861,3:148529,4:82354,5:138529,6:340897,7:68045,8:169787,9:153010,10:12801,11:242204,12:130502,13:4275,14:57269,15:44527,16:75287,17:79116,18:69373,19:96032


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104695.1:Gm30023:processed_pseudogene:889
samples:
,0:100,1:148,2:942,3:639,4:99,5:423,6:627,7:391,8:1034,9:762,10:1441,11:131,12:446,15:1345,17:334,18:140,19:50


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028139.5:Riiad1:protein_coding:630
samples:
,0:223773,1:140653,2:1507,3:1023,4:500,5:946,6:20479,7:8836,8:36969,9:18862,12:1633,13:1812,14:1034,15:804,16:681,17:200,18:683,19:2190


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028137.9:Celf3:protein_coding:3254
samples:
,0:175322,1:113780,2:8281,3:6675,4:2592,5:2804,6:482,7:402,11:4197,14:42397,15:34357,16:78216,17:50087,18:29310,19:23648


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028136.15:Snx27:protein_coding:6293
samples:
,0:294796,1:193941,2:319841,3:187796,4:127432,5:210908,6:902937,7:113977,8:125149,9:216252,10:5993,11:355120,12:67325,13:112420,14:73877,15:64644,16:110730,17:54646,18:65208,19:75325


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105522.1:Gm15235:processed_pseudogene:194
samples:
,0:209,1:307,2:667,3:177,4:409,5:686,6:3124,7:517,8:3480,9:1823,10:3730,11:3364,12:747,13:230,14:117,15:32,16:50,17:175,18:151,19:73


chrom: chr3
strand: -
right_annotated: ENSMUSG00000062896.3:Rpl31-ps11:processed_pseudogene:377
samples:
,0:13009,1:8215,2:105571,3:76277,4:28056,5:30334,6:127282,7:45619,8:92711,9:84245,10:176047,11:88759,12:22054,13:13744,14:3954,15:2209,16:4883,17:2515,18:4440,19:2180


chrom: chr3
strand: -
right_annotated: ENSMUSG00000005968.14:Tuft1:protein_coding:2632
samples:
,0:67420,1:51054,2:58301,3:47046,4:39847,5:48286,6:392918,7:61150,8:73743,9:225948,10:1110604,11:368148,12:79427,13:19996,14:398,15:119,16:9652,18:2474,19:87


chrom: chr3
strand: -
right_annotated: ENSMUSG00000085006.7:BC021767:transcribed_unprocessed_pseudogene:1794
samples:
,0:24294,1:15542,2:25817,3:20991,4:220500,5:453849,6:63037,7:2164,8:9753,9:17359,11:18773,12:21771,16:136,17:201,18:241,19:393


chrom: chr3
strand: +
right_annotated: ENSMUSG00000068877.12:Selenbp2:protein_coding:1719
samples:
,0:12533,1:7739,2:43785,3:43888,4:34292,5:30981,6:11875,7:2087,8:26594,9:21925,10:109929,11:68153,13:12810,18:50


chrom: chr3
strand: -
right_annotated: ENSMUSG00000081355.1:Gm15264:unprocessed_pseudogene:502
samples:
,0:3617,1:1898,2:2710,3:3743,4:3274,5:4629,6:13204,7:2942,8:10232,9:13356,10:84395,11:57686,12:4860,13:1364,16:123,18:460


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068876.14:Cgn:protein_coding:6021
samples:
,0:165371,1:113826,2:183035,3:125387,4:1457208,5:3035714,6:1726911,7:130463,8:1178381,9:988613,10:373756,11:928071,12:704556,13:264970,15:2450,16:5712,17:623,18:2590,19:8020


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038902.14:Pogz:protein_coding:6399
samples:
,0:88035,1:61527,2:378352,3:234205,4:146712,5:291362,6:724579,7:89316,8:180748,9:199049,10:39138,11:132932,12:56229,13:132269,14:54464,15:50036,16:37179,17:37914,18:32776,19:44156


chrom: chr3
strand: -
right_annotated: ENSMUSG00000005779.12:Psmb4:protein_coding:1183
samples:
,0:251668,1:154323,2:795535,3:557067,4:311556,5:470241,6:844156,7:156835,8:649747,9:554776,10:956187,11:393609,12:371900,13:41624,14:236372,15:194350,16:296586,17:317562,18:374819,19:303750


chrom: chr3
strand: +
right_annotated: ENSMUSG00000068874.13:Selenbp1:protein_coding:1712
samples:
,0:36166,1:24474,2:133720,3:105539,4:97286,5:82541,6:43034,7:8967,8:71069,9:46140,10:279574,11:164927,13:31075,18:4


chrom: chr3
strand: +
right_annotated: ENSMUSG00000005774.12:Rfx5:protein_coding:4852
samples:
,0:69509,1:43741,2:165653,3:110888,4:55189,5:92651,6:267224,7:50141,8:60521,9:63237,10:586,11:7428,12:160362,13:9066,14:2510,15:4650,16:12290,17:10806,18:10554,19:13807


chrom: chr3
strand: -
right_annotated: ENSMUSG00000087660.1:B230398E01Rik:antisense_RNA:1958
samples:
,0:32032,1:21653,2:53727,3:38176,4:18391,5:30479,6:155290,7:24908,8:39924,9:25737,10:613,11:7765,12:63198,13:7627,14:578,15:765,16:5305,17:3483,18:4448,19:4784


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038861.14:Pi4kb:protein_coding:3817
samples:
,0:78488,1:50373,2:287966,3:177512,4:195299,5:348256,6:641231,7:49442,8:115110,9:120475,10:170247,11:146150,12:22176,13:79171,14:24864,15:27592,16:25759,17:61704,18:85596,19:48968


chrom: chr3
strand: -
right_annotated: ENSMUSG00000084846.1:A730011C13Rik:antisense_RNA:1877
samples:
,0:11795,1:7724,2:28223,3:18999,4:17468,5:37308,6:83321,7:27408,8:27704,9:23339,10:15940,11:82433,12:1800,13:37110,14:2167,15:2092,16:1719,17:5425,18:10798,19:3554


chrom: chr3
strand: -
right_annotated: ENSMUSG00000086288.1:Gm15265:antisense_RNA:974
samples:
,0:15389,1:11618,2:53163,3:30363,4:33520,5:63450,6:133733,7:11316,8:35575,9:18935,10:28914,11:15324,12:15940,13:11142,14:5045,15:4296,16:3406,17:11121,18:13282,19:8435


chrom: chr3
strand: +
right_annotated: ENSMUSG00000099033.1:Mir7013:miRNA:72
samples:
,0:249,1:205,2:645,3:455,4:593,5:777,6:1416,7:188,8:851,9:99,11:78,13:2,15:1,16:163,17:2,18:59,19:35


chrom: chr3
strand: -
right_annotated: ENSMUSG00000019338.13:Zfp687:protein_coding:4632
samples:
,0:214474,1:146082,2:249888,3:153729,4:179074,5:349369,6:289618,7:32265,8:41238,9:46706,10:8252,11:49641,12:22460,13:22342,14:53062,15:2297,16:17994,17:14748,18:34066,19:30705


chrom: chr3
strand: +
right_annotated: ENSMUSG00000085956.1:4930481B07Rik:processed_transcript:1089
samples:
,0:7258,1:4266,2:5486,3:6193,4:3510,5:9564,6:1282,7:5678,8:3215,9:12885,12:180,13:7605,16:898,18:1859,19:591


chrom: chr3
strand: -
right_annotated: ENSMUSG00000005625.15:Psmd4:protein_coding:1838
samples:
,0:370280,1:226995,2:548641,3:389104,4:283356,5:485949,6:1103701,7:193064,8:855637,9:616075,10:1071581,11:909664,12:294830,13:170237,14:283903,15:171247,16:294084,17:392176,18:462560,19:314787


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028126.16:Pip5k1a:protein_coding:3676
samples:
,0:87365,1:53685,2:335023,3:167249,4:192045,5:345626,6:338607,7:58651,8:102964,9:119078,10:73639,11:393904,12:27266,13:48052,14:77290,15:63304,16:147288,17:102789,18:161724,19:116906


chrom: chr3
strand: +
right_annotated: ENSMUSG00000008958.14:Vps72:protein_coding:1456
samples:
,0:65026,1:39088,2:236031,3:126352,4:91986,5:144553,6:533774,7:48136,8:282966,9:202375,10:188964,11:73865,12:128326,13:28624,14:45089,15:22611,16:42164,17:15441,18:65768,19:48351


chrom: chr3
strand: +
right_annotated: ENSMUSG00000005628.12:Tmod4:protein_coding:1265
samples:
,0:7422,1:6032,2:1291,3:3386,4:2675,5:4754,6:47361,7:7907,8:28926,9:1706,10:9015,11:163873,16:100,19:87


chrom: chr3
strand: -
right_annotated: ENSMUSG00000092607.9:Scnm1:protein_coding:1054
samples:
,0:48230,1:29957,2:123015,3:45891,4:29147,5:43070,6:330213,7:54100,8:194760,9:121845,10:324892,11:185449,12:17740,13:31730,14:23655,15:13459,16:23339,17:23500,18:43335,19:24068


chrom: chr3
strand: +
right_annotated: ENSMUSG00000053769.5:Lysmd1:protein_coding:2394
samples:
,0:18700,1:13015,2:33965,3:14993,4:15322,5:31392,6:56457,7:5567,8:69763,9:22064,10:44623,11:2437,12:1995,13:15348,14:23620,15:16486,16:39014,17:25917,18:28071,19:16658


chrom: chr3
strand: -
right_annotated: ENSMUSG00000098498.1:Mir8099-1:miRNA:127
samples:
,0:1171,1:694,2:2328,3:978,4:931,5:1850,6:3414,7:816,8:3997,9:1096,10:2586,11:114,13:630,14:1706,15:1469,16:3500,17:1282,18:1924,19:1884


chrom: chr3
strand: +
right_annotated: ENSMUSG00000098198.1:Gm9169:processed_pseudogene:536
samples:
,0:19177,1:10584,2:35836,3:23489,4:16629,5:28823,6:73781,7:12520,8:54661,9:43416,10:103568,11:108724,12:13118,13:13810,14:43267,15:17262,16:31598,17:34015,18:56990,19:46799


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038777.19:Sema6c:protein_coding:4062
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000038766.16:Gabpb2:protein_coding:9380
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000097167.1:Gm16740:antisense_RNA:956
samples:
,0:23332,1:15181,2:23710,3:11229,4:9007,5:18065,6:39225,7:11083,8:62604,9:24428,10:508,11:5723,12:11769,13:10807,14:132398,15:54995,16:126502,17:135879,18:150145,19:120234


chrom: chr3
strand: -
right_annotated: ENSMUSG00000053192.9:Mllt11:protein_coding:2115
samples:
,0:588617,1:426333,2:71294,3:28838,4:37801,5:73990,6:192165,7:61204,8:293094,9:190123,10:340,11:180,12:62837,13:57501,14:1573365,15:638465,16:1661326,17:1611064,18:1985364,19:1393178


chrom: chr3
strand: +
right_annotated: ENSMUSG00000046722.14:Cdc42se1:protein_coding:3011
samples:
,0:225712,1:144853,2:384463,3:210150,4:541659,5:1077416,6:1029321,7:116424,8:459381,9:328445,10:49972,11:233038,12:129594,13:54116,14:65151,15:53950,16:74324,17:48370,18:46995,19:56588


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068860.5:Gm128:protein_coding:1959
samples:
,0:1137416,1:800759,2:5388,3:3136,4:7626,5:10961,6:8370,7:1383,8:6917,9:7852,10:11613,11:10362,19:65


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028115.16:Bnipl:protein_coding:1862
samples:
,0:5807,1:3104,2:1935,3:5587,4:3109,5:5879,6:35621,7:6160,8:88471,9:48757,10:225564,11:103753,14:1638,17:514,18:100,19:168


chrom: chr3
strand: -
right_annotated: ENSMUSG00000015711.8:Prune1:protein_coding:3140
samples:
,0:76057,1:51964,2:311826,3:147705,4:109226,5:213753,6:202685,7:23503,8:19551,9:52802,10:128243,11:12270,12:54,13:3179,14:43708,15:36838,16:26749,17:30221,18:84911,19:41243


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038712.16:Mindy1:protein_coding:2827
samples:
,0:105366,1:69240,2:520374,3:403666,4:162162,5:249107,6:723044,7:85351,8:100217,9:202689,10:104159,11:1141345,12:24276,13:51761,14:54993,15:47399,16:98906,17:39597,18:90956,19:73766


chrom: chr3
strand: -
right_annotated: ENSMUSG00000015702.13:Anxa9:protein_coding:1975
samples:
,0:12976,1:9780,2:15851,3:16583,4:45101,5:105675,6:16357,7:2404,8:959,9:5084,10:642,11:8598,12:30792,13:2001,14:1187,15:453,16:1200,17:412,18:966,19:707


chrom: chr3
strand: -
right_annotated: ENSMUSG00000093424.3:6330562C20Rik:antisense_RNA:784
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000015714.11:Cers2:protein_coding:2216
samples:
,0:73929,1:43360,2:702034,3:346888,4:360962,5:615071,6:1653897,7:164782,8:846560,9:459174,10:1168024,11:1745825,12:283612,13:438483,14:18365,15:14601,16:15833,17:52771,18:18917,19:13738


chrom: chr3
strand: -
right_annotated: ENSMUSG00000015697.14:Setdb1:protein_coding:4660
samples:
,0:223552,1:146156,2:430571,3:240557,4:149153,5:279839,6:417968,7:47186,8:164623,9:161092,10:224692,11:192403,12:234094,13:141929,14:14140,15:20267,16:89139,17:68889,18:58381,19:63418


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103900.1:Gm37500:TEC:1443
samples:
,0:3695,1:2422,2:5551,3:3367,4:2261,5:3473,6:5198,7:493,8:3220,9:3260,10:177,11:6373,12:192,13:1689,15:2451,16:2258,17:391,18:424,19:466


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105734.1:4930558C23Rik:protein_coding:731
samples:
,0:280897,1:172801,2:1314,3:871,4:345,5:549,6:36626,7:12408,8:28741,9:15814,10:104193,13:3866,18:188


chrom: chr3
strand: -
right_annotated: ENSMUSG00000096177.2:Gm5070:processed_pseudogene:862
samples:
,0:36595,1:26360,2:9422,3:7169,4:3624,5:4361,6:4983,7:561,8:1550,9:815,10:3279,11:1319,12:650,13:175,14:1813,15:799,16:2164,17:1412,18:1541,19:1104


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104646.1:Gm9173:processed_pseudogene:400
samples:
,0:3427,1:1549,2:17847,3:10341,4:4350,5:4080,6:1640,7:445,8:1064,9:959,10:771,11:1821,13:69,14:3362,15:1971,16:3428,17:2752,18:2663,19:2129


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097532.1:Gm4349:lincRNA:2559
samples:
,0:9050,1:5442,2:13207,3:9335,4:6915,5:12215,6:11044,7:1944,8:5281,9:6176,10:360,11:12439,13:5191,15:6249,16:7950,17:1349,18:4752,19:4732


chrom: chr3
strand: +
right_annotated: ENSMUSG00000015522.18:Arnt:protein_coding:4831
samples:
,0:71623,1:45277,2:368650,3:227461,4:170003,5:271930,6:400270,7:47387,8:98015,9:60994,10:31260,11:26379,12:25109,13:2449,14:1900,15:12676,16:40234,17:27544,18:35726,19:12482


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105395.1:Gm42672:processed_pseudogene:352
samples:
,0:787,1:335,2:1358,3:250,4:469,5:1134,6:1156,7:445,8:5075,9:547,10:15599,11:1056,14:19,16:21,17:128,18:453


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028111.4:Ctsk:protein_coding:1512
samples:
,0:3874,1:2072,2:38853,3:57596,4:41952,5:37730,6:322,7:838,12:82604,13:5797,14:32461,15:14448,16:38005,17:28523,18:82109,19:45504


chrom: chr3
strand: +
right_annotated: ENSMUSG00000083822.1:Hmgb1-ps5:processed_pseudogene:557
samples:
,0:1089,1:845,2:8953,3:6624,4:2048,5:2566,6:32305,7:10193,8:23066,9:15581,10:38535,11:42911,12:4338,13:3327,14:3621,15:1850,16:4176,17:4309,18:3577,19:4099


chrom: chr3
strand: +
right_annotated: ENSMUSG00000046519.15:Golph3l:protein_coding:2841
samples:
,0:66862,1:38467,2:299262,3:167040,4:96934,5:153431,6:388439,7:134769,8:290780,9:117843,10:5222,11:711656,12:11327,13:12315,14:24755,15:26426,16:75220,17:42620,18:64928,19:49186


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105460.1:Gm42671:TEC:1604
samples:
,0:3149,1:1284,2:8819,3:5874,4:3100,5:4385,6:45669,7:3094,8:6732,9:29079,10:1114,11:64110,14:972,15:951,16:3322,17:1496,18:2269,19:866


chrom: chr3
strand: +
right_annotated: ENSMUSG00000060438.5:Rps10-ps1:processed_pseudogene:495
samples:
,0:70036,1:40881,2:552994,3:446112,4:190707,5:222030,6:497618,7:105875,8:264568,9:233149,10:682213,11:235331,12:82732,13:36719,14:23524,15:17878,16:28167,17:18140,18:13264,19:14102


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038619.12:Ensa:protein_coding:3854
samples:
,0:221820,1:126170,2:514784,3:272715,4:223429,5:387154,6:1590529,7:155345,8:503167,9:518056,10:809850,11:1128288,12:860815,13:393221,14:1016299,15:558138,16:1074356,17:1265762,18:1391777,19:948998


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106383.1:E330034L11Rik:TEC:1742
samples:
,0:996,1:1049,2:5215,3:2308,4:2107,5:5891,6:75851,7:16349,8:19634,9:12711,10:350,11:15516,14:6260,15:509,16:2899,17:3758,18:10462,19:2158


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038612.16:Mcl1:protein_coding:3418
samples:
,0:233325,1:149447,2:927991,3:451717,4:443889,5:796070,6:1277268,7:240596,8:364189,9:254062,10:394411,11:441038,12:33007,13:7203,14:14203,15:12090,16:30116,17:22568,18:26487,19:32820


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028108.15:Ecm1:protein_coding:1900
samples:
,0:31947,1:22986,2:868911,3:159200,4:196654,5:164682,9:4696,11:44215,14:5298,15:3901,16:5961,17:4857,18:10375,19:2323


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028107.14:Tars2:protein_coding:4344
samples:
,0:72736,1:48150,2:206404,3:118473,4:90262,5:171287,6:183739,7:9386,8:49272,9:73258,10:62024,11:450070,12:119498,13:133492,14:37207,15:31738,16:76703,17:47286,18:56730,19:40989


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028106.13:Rprd2:protein_coding:9633
samples:
,0:153339,1:102602,2:299540,3:181710,4:185559,5:343352,6:511093,7:82344,8:190076,9:138519,10:191896,11:79237,12:7082,13:114706,14:11173,15:22424,16:43751,17:34024,18:111140,19:80919


chrom: chr3
strand: -
right_annotated: ENSMUSG00000015748.13:Prpf3:protein_coding:3362
samples:
,0:85859,1:53743,2:165635,3:98419,4:55700,5:88400,6:221204,7:41662,8:127832,9:45549,10:64178,11:388762,12:197775,13:83264,14:39735,15:13108,16:35124,17:10332,18:21443,19:18902


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097189.1:Gm26594:lincRNA:1094
samples:
,0:1566,1:1213,2:1745,3:441,4:384,5:661,6:1636,7:1059,8:4907,9:1295,10:5935,14:1470,15:300,16:941,18:439,19:38


chrom: chr3
strand: -
right_annotated: ENSMUSG00000054312.6:Mrps21:protein_coding:492
samples:
,0:22719,1:12411,2:187620,3:138833,4:40921,5:59250,6:474839,7:112556,8:365796,9:240397,10:650105,11:323042,12:48848,13:53097,14:36574,15:19714,16:42925,17:31644,18:28849,19:21932


chrom: chr3
strand: +
right_annotated: ENSMUSG00000080727.2:C920021L13Rik:antisense_RNA:2355
samples:
,0:18773,1:12786,2:26255,3:13844,4:5094,5:7985,6:23824,7:4906,8:10264,9:1083,10:10595,11:2073,12:11104,13:3478,14:29,15:448,16:4807,17:297,18:13259,19:9562


chrom: chr3
strand: -
right_annotated: ENSMUSG00000038550.10:Ciart:protein_coding:1965
samples:
,0:15810,1:10664,2:18902,3:15815,4:3838,5:4678,6:31101,7:9139,8:41322,9:97595,10:22095,12:10189,13:72253,14:29726,15:10665,16:19112,17:25461,18:67892,19:62180


chrom: chr3
strand: -
right_annotated: ENSMUSG00000038543.13:BC028528:protein_coding:809
samples:
,0:2143,1:1088,2:40313,3:21167,4:8594,5:9735,6:9204,7:9317,8:22802,9:1230,12:2222,13:14945,15:199,16:4239,18:2420,19:1827


chrom: chr3
strand: +
right_annotated: ENSMUSG00000015750.15:Aph1a:protein_coding:2863
samples:
,0:23748,1:15383,2:320256,3:210209,4:119589,5:213941,6:68014,7:10708,8:14215,9:13982,10:4142,11:136545,12:129314,13:35631,14:9902,15:12932,16:21597,17:18097,18:15153,19:7691


chrom: chr3
strand: -
right_annotated: ENSMUSG00000038526.14:Car14:protein_coding:1709
samples:
,0:4506,1:3940,2:518337,3:329680,4:34880,5:39695,6:1763,7:7942,8:5224,9:1896,10:3758,11:414885,12:371121,13:164167,15:1638,16:863,18:665,19:404


chrom: chr3
strand: +
right_annotated: ENSMUSG00000015749.12:Anp32e:protein_coding:3274
samples:
,0:52306,1:27108,2:742521,3:385770,4:268690,5:503534,6:718933,7:137771,8:286200,9:192262,10:451748,11:269583,12:143331,13:69020,14:122703,15:73016,16:122448,17:84192,18:103368,19:95024


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106640.1:Gm20940:processed_pseudogene:360
samples:
,0:100,1:100,2:296,3:197,4:93,6:1923,7:1035,8:2766,9:2781,10:2240,11:1167,12:291,13:308,17:133,18:38


chrom: chr3
strand: -
right_annotated: ENSMUSG00000015745.9:Plekho1:protein_coding:1931
samples:
,0:74049,1:51363,2:133175,3:64042,4:108030,5:168419,6:147503,7:13785,8:7111,9:24421,10:6193,11:4151,12:897,13:167,14:14470,15:3079,16:7993,17:17896,18:8570,19:5260


chrom: chr3
strand: -
right_annotated: ENSMUSG00000015747.5:Vps45:protein_coding:2637
samples:
,0:33004,1:22098,2:112931,3:68222,4:48612,5:84569,6:243027,7:47696,8:100666,9:75898,10:274890,11:194294,12:4487,13:37519,14:171779,15:110992,16:106480,17:112879,18:164906,19:96140


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105995.1:Gm43554:processed_pseudogene:186
samples:
,0:4690,1:3076,2:1980,3:1532,4:741,5:1593,6:633,7:102,8:612,9:2031,10:51,11:2915,12:173,13:300,14:350,15:485,16:404,17:469,18:899,19:200


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038495.14:Otud7b:protein_coding:8339
samples:
,0:449379,1:286466,2:249372,3:139198,4:132172,5:227278,6:805391,7:79747,8:311871,9:183565,10:66403,11:324416,12:1800,13:25242,14:19868,15:5670,16:13068,17:35504,18:13283,19:3370


chrom: chr3
strand: +
right_annotated: ENSMUSG00000045934.15:Mtmr11:protein_coding:2778
samples:
,0:17537,1:11581,2:110993,3:52321,4:26203,5:33671,6:671567,7:64398,8:126189,9:250458,10:115756,11:857400,12:171338,13:34263,15:649,16:3929,18:4203,19:559


chrom: chr3
strand: -
right_annotated: ENSMUSG00000097204.2:Gm17690:antisense_RNA:3467
samples:
,0:30503,1:20583,2:67006,3:30374,4:18588,5:26590,6:426778,7:49167,8:72735,9:138458,10:50519,11:537297,12:109375,13:13843,15:2190,16:3239,18:7116,19:1034


chrom: chr3
strand: +
right_annotated: ENSMUSG00000068856.3:Sf3b4:protein_coding:1915
samples:
,0:136499,1:109669,2:136838,3:61871,4:53233,5:83559,6:285547,7:33155,8:59120,9:52356,10:39275,11:23037,12:57066,13:6402,14:26497,15:9223,16:21217,17:14138,18:48529,19:23047


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038486.9:Sv2a:protein_coding:4334
samples:
,0:2015,1:1356,2:16596,3:20891,4:8603,5:8792,6:96469,7:9117,8:13252,9:25200,11:45683,13:2283,14:655467,15:564892,16:891832,17:752427,18:767284,19:639888


chrom: chr3
strand: -
right_annotated: ENSMUSG00000015943.11:Bola1:protein_coding:1082
samples:
,0:51368,1:35843,2:72298,3:39471,4:18758,5:25783,6:124826,7:37179,8:145845,9:90066,10:91349,11:58544,12:14131,13:5871,14:21640,15:12867,16:23639,17:34707,18:35933,19:23305


chrom: chr3
strand: -
right_annotated: ENSMUSG00000086556.2:Gm15444:antisense_RNA:388
samples:
,0:6079,1:3662,2:514,3:276,4:313,5:465,6:226,7:365,8:2460,9:192,10:110,11:98,12:429,14:142,18:587,19:85


chrom: chr3
strand: +
right_annotated: ENSMUSG00000063689.4:Hist2h2ab:protein_coding:444
samples:
,0:5266,1:3333,2:790,3:395,4:400,5:537,6:226,7:322,8:1764,9:192,10:110,11:98,12:429,14:142,18:219,19:85


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068855.3:Hist2h2ac:protein_coding:520
samples:
,0:13051,1:8627,2:6664,3:1007,4:2986,5:6089,6:5664,7:991,8:4973,9:5590,10:2419,11:1707,12:322,14:1730,15:330,16:200,17:50,18:382,19:144


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106431.1:Gm44492:miRNA:141
samples:
,0:3343,1:2466,2:2238,3:275,4:829,5:1814,6:1026,7:115,8:1338,9:1429,10:658,11:386,12:87,14:687,15:161,16:82,17:50,18:97,19:22


chrom: chr3
strand: +
right_annotated: ENSMUSG00000068854.7:Hist2h2be:protein_coding:2620
samples:
,0:58777,1:37180,2:780018,3:24957,4:16817,5:26351,6:168580,7:30538,8:135474,9:32529,10:232,11:131580,12:5277,15:3260,16:7033,17:98,18:1009,19:4145


chrom: chr3
strand: -
right_annotated: ENSMUSG00000081058.5:Hist2h3c2:protein_coding:1020
samples:
,0:6798,1:3225,2:75752,3:4474,4:12796,5:26314,6:20263,7:2304,8:796,9:1582,10:36,11:48,12:1,17:29,18:100


chrom: chr3
strand: +
right_annotated: ENSMUSG00000093577.1:Gm20632:antisense_RNA:2427
samples:
,0:200430,1:136735,2:129528,3:19566,4:56272,5:102399,6:170784,7:13680,8:86889,9:51936,10:120423,11:57671,12:31063,13:5071,14:7188,15:3978,16:3729,17:1140,18:5504,19:4391


chrom: chr3
strand: -
right_annotated: ENSMUSG00000063954.7:Hist2h2aa2:protein_coding:528
samples:
,0:179862,1:126021,2:110060,3:14418,4:40957,5:71862,6:65024,7:10779,8:75033,9:43007,10:87498,11:55469,12:29615,13:4923,14:5592,15:3324,16:3558,17:1112,18:3771,19:3948


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106587.1:AC125099.2:miRNA:138
samples:
,0:47825,1:35310,2:28944,3:3332,4:9861,5:16871,6:14761,7:3017,8:16924,9:9892,10:24087,11:14566,12:7368,13:968,14:1315,15:681,16:881,17:317,18:775,19:1023


chrom: chr3
strand: -
right_annotated: ENSMUSG00000093553.1:Gm20633:antisense_RNA:2831
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000064220.6:Hist2h2aa1:protein_coding:586
samples:
,0:186635,1:121817,2:107264,3:11357,4:36443,5:67199,6:63031,7:11177,8:83293,9:43855,10:92392,11:56917,12:28677,13:5721,14:4931,15:3257,16:4406,17:1165,18:2916,19:5105


chrom: chr3
strand: +
right_annotated: ENSMUSG00000070392.5:Gm20634:processed_transcript:2956
samples:
,0:201381,1:129234,2:184608,3:26028,4:76030,5:161456,6:268228,7:29653,8:91485,9:90687,10:90695,11:55852,12:28538,13:5518,14:5013,15:3715,16:4142,17:1121,18:2997,19:4997


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105610.1:AC125099.1:miRNA:138
samples:
,0:45601,1:32927,2:28106,3:3104,4:8523,5:16299,6:14860,7:3452,8:19994,9:10787,10:23840,11:15013,12:6327,13:1314,14:797,15:638,16:1041,17:307,18:691,19:992


chrom: chr3
strand: +
right_annotated: ENSMUSG00000093769.4:Hist2h3c1:protein_coding:1825
samples:
,0:15164,1:7285,2:62131,3:11090,4:30297,5:78075,6:207038,7:18926,8:10498,9:47994,10:35,11:72,12:362,13:1,16:2,18:200


chrom: chr3
strand: -
right_annotated: ENSMUSG00000091405.2:Hist2h4:protein_coding:1630
samples:
,0:50,1:100,2:4631,3:1505,4:2382,5:5321,6:6875,7:163,8:165,9:36,14:178,15:3113,16:50,17:4165,18:168,19:1139


chrom: chr3
strand: -
right_annotated: ENSMUSG00000093656.1:Gm20628:antisense_RNA:3215
samples:
,0:2089,1:696,2:10114,3:1698,4:10431,5:21655,6:9816,7:4770,8:14634,9:6941,10:51,11:632,12:323,13:1956,14:5704,15:1162,16:107,17:508,18:9324,19:1756


chrom: chr3
strand: +
right_annotated: ENSMUSG00000074403.2:Hist2h3b:protein_coding:488
samples:
,0:1406,1:448,2:8489,3:335,4:2545,5:4188,6:1566,7:180,8:3610,9:1432,11:6,14:50,16:78,17:508,18:1001,19:100


chrom: chr3
strand: +
right_annotated: ENSMUSG00000050936.5:Gm42743:lincRNA:1511
samples:
,0:321,1:328,2:359,3:2072,4:11724,5:32229,6:40294,7:2734,8:7731,9:1905,11:490,12:7702,13:4374,16:2050,18:2122,19:1185


chrom: chr3
strand: -
right_annotated: ENSMUSG00000097041.1:Pafah1b1-ps1:processed_pseudogene:1046
samples:
,0:22531,1:14447,2:14719,3:4861,4:4811,5:9929,6:1243,7:200,8:484,9:228,10:259,11:1027,14:1953,15:1645,16:2221,17:2682,18:1717,19:895


chrom: chr3
strand: -
right_annotated: ENSMUSG00000095836.3:Gm21960:processed_pseudogene:452
samples:
,0:1850,1:555,2:1406,3:665,4:3835,5:13911,6:4092,7:181,8:633,9:628,10:1642,11:1186,12:60,13:196,19:253


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104642.1:Gm9207:processed_pseudogene:1115
samples:
,0:13158,1:9988,2:54532,3:27274,4:22784,5:37159,6:6805,7:715,8:2326,12:718,13:90,14:845,15:1744,16:2550,17:1200,18:1999,19:2945


chrom: chr3
strand: -
right_annotated: ENSMUSG00000074398.5:Gm15441:antisense_RNA:1653
samples:
,0:50039,1:30661,2:599919,3:448406,4:277704,5:239756,6:67059,7:6199,8:53904,9:25431,10:50,12:18496,13:15176,18:631,19:339


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038393.14:Txnip:protein_coding:2827
samples:
,0:223371,1:127659,2:3360207,3:2512760,4:1545528,5:1355653,6:1037812,7:116271,8:552312,9:240771,10:288,11:15571,12:91606,13:99410,14:365,18:5296,19:5134


chrom: chr3
strand: +
right_annotated: ENSMUSG00000087610.1:Gm16253:protein_coding:550
samples:
,0:3877,1:2225,2:8387,3:3687,4:1787,5:4677,6:11745,7:85,8:3975,9:3595,11:2363,12:3732,13:113,14:3297,15:1146,16:3168,17:1729,18:1582,19:1387


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028104.14:Polr3gl:protein_coding:1427
samples:
,0:38791,1:26583,2:95764,3:49892,4:26033,5:41151,6:153672,7:21255,8:73756,9:67951,10:2704,11:32497,12:48921,13:4173,14:55108,15:18781,16:58650,17:24517,18:29366,19:25501


chrom: chr3
strand: +
right_annotated: ENSMUSG00000049288.4:Lix1l:protein_coding:3312
samples:
,0:44386,1:22472,2:350005,3:210540,4:180458,5:302057,6:1846,7:1165,8:2341,9:3045,10:53,12:18339,13:2289,14:1816,15:858,16:1085,17:4248,18:2019,19:300


chrom: chr3
strand: -
right_annotated: ENSMUSG00000045327.7:6330549D23Rik:transcribed_processed_pseudogene:3228
samples:
,0:27336,1:19022,2:72532,3:34810,4:21570,5:38415,6:12836,7:1918,8:37695,9:20679,10:54546,11:49758,12:988,13:5313,14:8948,15:10018,16:10298,17:7399,18:11892,19:10670


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038374.10:Rbm8a:protein_coding:2873
samples:
,0:54307,1:30960,2:203243,3:137328,4:63945,5:110050,6:693565,7:156995,8:505728,9:395844,10:533637,11:834917,12:88513,13:101080,14:77622,15:49266,16:71765,17:50260,18:117239,19:58466


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028102.15:Pex11b:protein_coding:2516
samples:
,0:179315,1:125719,2:185650,3:103392,4:69760,5:110506,6:360085,7:51791,8:219362,9:164275,10:337185,11:551516,12:69245,13:195350,14:114673,15:58322,16:123853,17:148237,18:213188,19:142601


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106447.1:Gm42957:protein_coding:3624
samples:
,0:81469,1:60523,2:85493,3:49243,4:34471,5:51008,6:123599,7:13498,8:82446,9:63074,10:117474,11:143847,12:22013,13:59889,14:40676,15:23010,16:43930,17:54016,18:85670,19:52220


chrom: chr3
strand: +
right_annotated: ENSMUSG00000090210.7:Itga10:protein_coding:5044
samples:
,0:5095,1:3900,2:26301,3:11211,4:5175,5:11784,6:25202,7:376,8:12275,9:7254,11:9112,13:2053,15:130,16:100,19:133


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105144.1:Rpl21-ps11:processed_pseudogene:480
samples:
,0:350,1:400,2:3488,3:2146,4:793,5:897,6:6220,7:3579,8:23777,9:19350,10:18763,11:12706,12:1889,13:915,14:3096,15:2035,16:4155,17:4149,18:1595,19:2698


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038354.13:Ankrd35:protein_coding:4052
samples:
,0:3690,1:2284,2:40014,3:34576,4:8175,5:14118,6:131,7:348,12:2596,14:11745,15:11705,16:16494,17:34233,18:15919,19:10552


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028101.18:Pias3:protein_coding:3079
samples:
,0:17461,1:12319,2:162703,3:105442,4:74226,5:140913,6:370488,7:26398,8:47610,9:96236,10:14388,11:80230,12:751347,13:252607,14:20211,15:10505,16:19793,17:23682,18:6961,19:14740


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028100.11:Nudt17:protein_coding:2239
samples:
,0:1449,1:1199,2:8805,3:11040,4:6217,5:5320,6:5,7:180,8:900,9:114,10:27492,12:21523,14:6035,15:14122,16:15705,17:23562,18:16857,19:11474


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028099.8:Polr3c:protein_coding:2817
samples:
,0:145135,1:101364,2:158440,3:112232,4:60409,5:90324,6:281718,7:40243,8:190616,9:56131,10:285088,11:394821,12:139849,13:8755,14:23864,15:27286,16:57670,17:65047,18:70291,19:46910


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104795.1:Gm42783:TEC:795
samples:
,0:350,1:227,2:2050,3:1368,4:497,5:1067,6:5666,7:4254,8:6555,9:25,10:167,11:216,12:19963,16:1687,17:1722,18:1994,19:747


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028098.13:Rnf115:protein_coding:2209
samples:
,0:56762,1:31246,2:230117,3:113699,4:65204,5:111620,6:356628,7:43540,8:136531,9:121406,10:15301,11:129860,12:41274,14:91194,15:43969,16:120128,17:133582,18:158853,19:144195


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038298.14:Pdzk1:protein_coding:2972
samples:
,0:1092003,1:728121,2:60627,3:38929,4:23019,5:41934,6:21466,7:5907,8:7377,9:108,10:28328,11:679,12:1145,13:6404,14:4941,15:12450,16:14287,17:5420,18:2187,19:6406


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028096.13:Gpr89:protein_coding:4598
samples:
,0:454531,1:318285,2:207065,3:119115,4:66934,5:117756,6:316751,7:48549,8:206415,9:136728,10:206293,11:228048,12:105643,13:147208,14:40150,15:82855,16:109516,17:75132,18:24353,19:44634


chrom: chr3
strand: +
right_annotated: ENSMUSG00000057123.14:Gja5:protein_coding:5689
samples:
,0:7921,1:4329,2:32308,3:7507,4:7919,5:25815,6:16096,7:4638,8:17022,9:11077,10:26189,11:27026,12:5597,13:6321,14:4094,15:3776,16:7673,17:4211,18:4232,19:3336


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028093.15:Acp6:protein_coding:1754
samples:
,0:24292,1:10432,2:146825,3:114195,4:63238,5:120721,6:227284,7:22324,8:205479,9:120161,10:492646,11:175447,12:65566,13:4499,14:17774,15:21661,16:17671,17:33169,18:8984,19:16193


chrom: chr3
strand: -
right_annotated: ENSMUSG00000038256.15:Bcl9:protein_coding:6102
samples:
,0:54921,1:37798,2:194755,3:102755,4:92907,5:177862,6:223097,7:26803,8:62209,9:52103,10:55355,11:19134,12:3678,13:25611,14:32252,15:36940,16:78410,17:31083,18:34879,19:31729


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106536.1:Gm42508:TEC:3292
samples:
,0:79,2:81,3:149,5:150,6:19766,7:16408,8:1049,9:11478,10:2175,11:106168,14:50,15:895,16:107,18:50,19:115


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028089.5:Chd1l:protein_coding:3008
samples:
,0:342595,1:230542,2:104098,3:80634,4:37482,5:56795,6:183905,7:35611,8:58359,9:79576,11:191911,12:138801,13:1105,15:9078,16:19173,17:16805,18:15971,19:18689


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105004.1:Gm43075:TEC:3905
samples:
,0:6216,1:4070,2:3818,3:2140,4:2314,5:4124,6:1369,7:726,8:1127,9:355,12:2154,13:24,15:173,16:323,17:179,18:142,19:95


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028088.14:Fmo5:protein_coding:5314
samples:
,0:5560,1:3170,2:69493,3:33999,4:39634,5:49244,6:4841,7:2501,8:42952,9:19329,10:97806,11:276414,12:57,15:981,18:219,19:35


chrom: chr3
strand: +
right_annotated: ENSMUSG00000038205.12:Prkab2:protein_coding:5006
samples:
,0:65036,1:43774,2:476129,3:165238,4:69402,5:95916,6:427509,7:56402,8:140267,9:74259,10:2204,11:434628,12:9601,13:50027,14:73078,15:56287,16:66533,17:43234,18:117814,19:63121


chrom: chr3
strand: -
right_annotated: ENSMUSG00000090441.2:Gm17651:protein_coding:36
samples:
,0:88,1:10,2:902,3:359,4:126,5:240,6:1406,7:233,8:795,9:387,10:207,11:2201,12:27,13:36,14:210,15:48,16:136,17:97,18:262,19:127


chrom: chr3
strand: -
right_annotated: ENSMUSG00000038170.15:Pde4dip:protein_coding:12417
samples:
,0:515610,1:372500,2:261991,3:154028,4:69656,5:94855,6:2281715,7:238336,8:591831,9:462381,10:1311593,11:1057265,12:148467,13:202448,14:154764,15:130382,16:239343,17:237727,18:210419,19:125947


chrom: chr3
strand: -
right_annotated: ENSMUSG00000098381.1:Mir7225:miRNA:54
samples:
,0:10324,1:8046,2:219,3:134,4:92,5:231,6:1886,7:264,8:1234,11:576,14:2889,15:2020,16:2681,17:4352,18:3345,19:1441


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105245.1:Gm31305:antisense_RNA:1374
samples:
,0:1511,1:806,2:995,3:531,4:3009,5:10712,6:55991,7:5179,8:17054,9:24534,14:1080,15:1633,16:3440,17:2485,18:9523,19:1973


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027879.9:Sec22b:protein_coding:3709
samples:
,0:107341,1:60603,2:454832,3:282011,4:192221,5:331118,6:3528182,7:642963,8:1754085,9:1002038,10:1556821,11:1804462,12:286954,13:173957,14:160600,15:139202,16:242899,17:190514,18:365227,19:235904


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027878.11:Notch2:protein_coding:10500
samples:
,0:57078,1:38491,2:331401,3:252735,4:284427,5:550231,6:870258,7:73045,8:274274,9:155250,10:26631,11:154925,12:7471,13:2140,14:400,15:2790,16:885,17:100,18:6991,19:414


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106486.1:Gm9771:processed_pseudogene:1137
samples:
,0:217,1:250,2:1944,3:1161,4:650,5:900,6:1617,7:612,8:758,9:640,10:710,11:1775,12:242,14:147,15:150,16:598,17:270,18:562,19:250


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027875.12:Hmgcs2:protein_coding:3290
samples:
,0:300010,1:148565,2:2841232,3:1220296,4:1164852,5:1591241,6:1012643,7:132189,8:352507,9:340714,10:298197,11:136,12:2,13:35930,16:4,18:18,19:133


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105909.1:Gm43189:sense_intronic:3069
samples:
,0:300,1:100,2:799,3:699,4:846,5:697,6:2480,7:1327,8:1415,9:83,10:153,11:432246,12:101,13:300,15:28,16:52,17:90,18:3146,19:31


chrom: chr3
strand: -
right_annotated: ENSMUSG00000053398.11:Phgdh:protein_coding:1893
samples:
,0:17370,1:10506,2:58929,3:61449,4:92258,5:189223,6:599750,7:70406,8:407619,9:284217,10:1455146,11:1095378,12:286938,13:227322,15:198,16:50,18:743,19:122


chrom: chr3
strand: +
right_annotated: ENSMUSG00000050064.14:Zfp697:protein_coding:5166
samples:
,0:5424,1:3699,2:26573,3:19436,4:15155,5:37425,6:547453,7:104440,8:167716,9:147746,10:772,11:380293,14:12636,15:1285,16:9102,17:2132,18:7415,19:3465


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105641.1:Gm5853:processed_pseudogene:632
samples:
,0:3952,1:2591,2:30085,3:24845,4:6291,5:9295,6:28316,7:7445,8:20505,9:11817,10:35662,11:35329,12:3768,13:3411,14:3129,15:1620,16:2933,17:2429,18:3484,19:3017


chrom: chr3
strand: -
right_annotated: ENSMUSG00000063730.13:Hsd3b2:protein_coding:3695
samples:
,0:9231,1:5137,2:204201,3:155785,4:4379,5:4244,6:4021,7:71,8:1828,9:538,11:270,14:221,15:168,16:1768,17:966,18:2997,19:971


chrom: chr3
strand: -
right_annotated: ENSMUSG00000062410.14:Hsd3b3:protein_coding:1610
samples:
,0:9709,1:4464,2:333365,3:91655,4:4362,5:4201,6:4660,7:427,8:4588,9:1500,15:186,16:3668,17:2827,18:2726,19:2014


chrom: chr3
strand: +
right_annotated: ENSMUSG00000082185.1:Gm12428:processed_pseudogene:727
samples:
,0:9713,1:6326,2:62922,3:37827,4:56149,5:113839,6:27343,7:4653,8:13975,9:6654,10:30764,11:13872,12:9851,14:390392,15:173653,16:340174,17:581574,18:388442,19:368860


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027871.16:Hsd3b1:protein_coding:1855
samples:
,0:177738,1:72614,2:50705748,3:18332090,4:735046,5:759782,6:369,7:352,8:187,9:60,15:69,16:270,17:157,18:2330,19:209


chrom: chr3
strand: +
right_annotated: ENSMUSG00000004233.14:Wars2:protein_coding:4410
samples:
,0:6481,1:3439,2:87930,3:54702,4:29633,5:53363,6:329042,7:41083,8:127580,9:50003,10:160748,11:59961,12:9706,13:87246,14:3429,15:6581,16:36768,17:28733,18:4987,19:12535


chrom: chr3
strand: +
right_annotated: ENSMUSG00000080832.4:M6pr-ps:processed_pseudogene:830
samples:
,0:19612,1:11666,2:115326,3:68433,4:59437,5:90125,6:26174,7:1767,8:18743,9:15336,10:21801,11:73722,12:12529,13:12348,14:24012,15:16606,16:24325,17:17210,18:15547,19:14616


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027867.10:Spag17:protein_coding:7862
samples:
,0:1661384,1:1111288,2:14139,3:7999,4:7240,5:11512,6:44533,7:1808,8:12316,9:3766,10:13220,11:14780,13:27525,14:3413,15:2028,16:1841,17:2453,18:4664,19:1466


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033285.15:Wdr3:protein_coding:3432
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027865.10:Gdap2:protein_coding:3361
samples:
,0:90482,1:54620,2:88444,3:41428,4:45350,5:76123,6:458599,7:57728,8:247604,9:169516,10:147425,11:46621,12:48278,13:21527,14:143223,15:45581,16:136333,17:143414,18:186302,19:161593


chrom: chr3
strand: -
right_annotated: ENSMUSG00000044468.14:Fam46c:protein_coding:5640
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000008763.16:Man1a2:protein_coding:7969
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000105561.1:Gm43462:sense_intronic:3648
samples:
,0:300,1:100,2:1097,3:599,4:798,5:1048,6:118252,7:27346,8:98879,9:37359,10:78884,11:95356,12:360,14:5035,16:3873,18:6425,19:532


chrom: chr3
strand: +
right_annotated: ENSMUSG00000033233.17:Trim45:protein_coding:6000
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000033222.16:Ttf2:protein_coding:4541
samples:
,0:37798,1:23623,2:161433,3:120114,4:64441,5:120199,6:161516,7:14417,8:40466,9:16049,12:31763,14:812,15:617,18:612


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027864.9:Ptgfrn:protein_coding:5902
samples:
,0:8381,1:4898,2:261254,3:258200,4:102168,5:136407,6:285080,7:40088,8:42547,9:56530,10:22661,11:129609,12:12011,13:463,15:379


chrom: chr3
strand: +
right_annotated: ENSMUSG00000083546.1:Tpt1-ps1:processed_pseudogene:436
samples:
,0:244,2:794,3:146,4:168,5:240,6:6222,7:935,8:3497,9:2758,10:3516,11:4981,12:904,13:383,14:282,15:694,16:237,17:319,18:149,19:167


chrom: chr3
strand: -
right_annotated: ENSMUSG00000072381.3:Gm10355:processed_pseudogene:517
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000042035.11:Igsf3:protein_coding:7431
samples:
,0:62629,1:37503,2:176354,3:177821,4:48532,5:53632,6:1196344,7:110922,8:548876,9:358548,10:135903,11:704378,12:277377,13:250019,14:10608,15:20629,16:23707,17:48858,18:111059,19:63643


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106137.1:Gm42538:antisense_RNA:858
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000033161.10:Atp1a1:protein_coding:3679
samples:
,0:375274,1:218409,2:2621427,3:1377943,4:2043775,5:4046963,6:1313305,7:112975,8:247932,9:227089,10:54921,11:282636,12:106396,13:18349,14:1924188,15:1654512,16:2108121,17:2038392,18:1739206,19:1780480


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033147.16:Slc22a15:protein_coding:6629
samples:
,0:206314,1:141414,2:46843,3:16549,4:9062,5:12230,6:37652,7:10050,8:67719,9:15213,11:43534,12:3550,13:8126,14:12816,15:6212,16:5343,17:3320,18:156,19:1150


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027860.15:Vangl1:protein_coding:6672
samples:
,0:3322,1:1847,2:89581,3:45109,4:55382,5:72673,6:758571,7:55485,8:263217,9:137604,10:128991,11:701191,12:674035,13:415713,15:48,17:177,18:950,19:50


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106459.1:Gm43245:processed_pseudogene:468
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000104685.1:Gm19202:processed_pseudogene:808
samples:
,0:3725,1:1872,2:48,3:161,4:50,5:89,6:7934,7:539,8:2416,9:2210,10:3134,11:2860,12:351,13:407,14:248,15:100,16:276,17:341,18:879,19:335


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027858.13:Tspan2:protein_coding:4585
samples:
,0:5340,1:3336,2:47219,3:17603,4:14759,5:16268,6:685815,7:119519,8:222059,9:198108,10:46937,11:61723,12:1915,13:28898,14:16061,15:11217,16:17993,17:7324,18:4367,19:3695


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027855.13:Sycp1:protein_coding:3437
samples:
,0:649948,1:406879,2:3615,3:9859,4:9189,5:16503,6:5647,7:365,8:1031,14:380,15:671,16:680,17:803,18:67


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027854.12:Sike1:protein_coding:7375
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000068823.10:Csde1:protein_coding:4687
samples:
,0:1790827,1:1103230,2:1532845,3:823499,4:452132,5:814227,6:22575898,7:2316948,8:15782128,9:10294024,10:6107923,11:65452616,12:2765327,13:2420267,14:287390,15:253394,16:567641,17:406183,18:498958,19:373629


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027852.14:Nras:protein_coding:4470
samples:
,0:344233,1:225806,2:435784,3:228081,4:146079,5:249425,6:9815893,7:1746227,8:4902074,9:2758291,10:1247616,11:8606928,12:1422612,13:576870,14:148160,15:103829,16:114584,17:64469,18:62474,19:75237


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104671.1:Gm43062:lincRNA:1319
samples:
,0:921,1:550,2:2998,3:900,4:1295,5:1699,6:135274,7:12079,8:23089,9:48663,10:101,11:15470,12:61323,13:53255,14:6141,15:3100,16:11276,17:16,18:4880,19:3238


chrom: chr3
strand: +
right_annotated: ENSMUSG00000007379.15:Dennd2c:protein_coding:5145
samples:
,0:19642,1:12405,2:38936,3:31096,4:9342,5:15875,6:131249,7:12741,8:51578,9:32006,11:247017,13:1217,15:145,18:27


chrom: chr3
strand: +
right_annotated: ENSMUSG00000005687.14:Bcas2:protein_coding:1467
samples:
,0:278993,1:167194,2:211638,3:123978,4:77776,5:117540,6:1222802,7:251796,8:756308,9:684163,10:1516186,11:878999,12:300157,13:99877,14:161135,15:102638,16:210224,17:189553,18:208797,19:157282


chrom: chr3
strand: +
right_annotated: ENSMUSG00000033014.12:Trim33:protein_coding:8875
samples:
,0:270910,1:188576,2:465988,3:249961,4:206249,5:414102,6:1801119,7:314996,8:483385,9:267540,10:412285,11:1050317,12:145821,13:145340,14:58087,15:37616,16:116403,17:23215,18:85964,19:39304


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104925.1:Gm43061:sense_intronic:2241
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027849.18:Syt6:protein_coding:5717
samples:
,0:1809,1:1090,2:15706,3:7343,4:8307,5:13260,6:7354,7:10094,8:29527,9:42026,10:52339,11:290315,12:143631,13:91817,14:413393,15:412885,16:620208,17:377821,18:343243,19:233317


chrom: chr3
strand: -
right_annotated: ENSMUSG00000087119.4:Atg4a-ps:protein_coding:2115
samples:
,0:4245,1:1929,2:48699,3:20270,4:22336,5:35038,6:21883,7:13970,8:70540,9:99449,10:2042,11:206637,12:13500,13:23074,14:7366,15:2356,16:4449,17:7105,18:4000,19:859


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027848.12:Olfml3:protein_coding:5465
samples:
,0:26930,1:16858,2:83467,3:86983,4:214295,5:175972,6:348703,7:45640,8:276312,9:206474,10:2238294,11:2251209,12:1133446,13:1311008,18:350,19:3267


chrom: chr3
strand: -
right_annotated: ENSMUSG00000008730.17:Hipk1:protein_coding:8201
samples:
,0:866738,1:583505,2:606483,3:407872,4:320459,5:609818,6:6231949,7:615741,8:4441563,9:3387667,10:1721478,11:4108082,12:137722,13:144734,14:123689,15:80931,16:114407,17:130637,18:85840,19:54553


chrom: chr3
strand: +
right_annotated: ENSMUSG00000085754.7:Gm15886:antisense_RNA:1250
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027845.15:Dclre1b:protein_coding:5805
samples:
,0:26395,1:18349,2:62576,3:53227,4:25293,5:44329,6:144214,7:16253,8:40361,9:21922,12:101542,13:12992,15:15209,16:5864,17:7289,18:1200,19:13658


chrom: chr3
strand: +
right_annotated: ENSMUSG00000084997.7:Gm15471:processed_transcript:625
samples:
,0:2912,1:1804,2:4764,3:5318,4:2081,5:4158,6:13803,7:401,8:724,9:1324,12:11731,13:1928,15:1104,16:686,17:1429,19:818


chrom: chr3
strand: +
right_annotated: ENSMUSG00000032952.11:Ap4b1:protein_coding:2907
samples:
,0:180799,1:111960,2:138940,3:58858,4:48624,5:94100,6:236693,7:29799,8:30718,9:78135,10:395445,11:48117,14:46491,15:39259,16:35040,17:26312,18:37873,19:49261


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105053.1:Gm43064:protein_coding:3144
samples:
,0:160553,1:99023,2:120813,3:50996,4:42356,5:82607,6:181840,7:24720,8:26770,9:63904,10:366195,11:35992,14:38492,15:34125,16:30323,17:21658,18:32440,19:41961


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027843.13:Ptpn22:protein_coding:2743
samples:
,0:2904,1:1597,2:38283,3:6583,4:4721,5:3773,6:240851,7:42123,8:98479,9:190025,11:93704,12:2747,13:80622,14:458


chrom: chr3
strand: +
right_annotated: ENSMUSG00000044098.14:Rsbn1:protein_coding:6743
samples:
,0:487050,1:320562,2:221916,3:113020,4:76573,5:127180,6:710759,7:218845,8:288909,9:92898,10:294397,11:375257,12:35734,13:1340,14:19046,15:26768,16:31340,17:6495,18:54088,19:23105


chrom: chr3
strand: -
right_annotated: ENSMUSG00000089998.2:Phtf1os:antisense_RNA:4046
samples:
,0:62393,1:37356,2:100968,3:53038,4:31899,5:56901,6:624468,7:170149,8:184113,9:69321,10:241970,11:66379,12:25352,13:820,14:11593,15:12241,16:13485,17:2353,18:17752,19:9217


chrom: chr3
strand: +
right_annotated: ENSMUSG00000058388.14:Phtf1:protein_coding:3453
samples:
,0:387715,1:245932,2:183351,3:81544,4:57454,5:95547,6:441317,7:199350,8:345857,9:196655,10:309402,11:79350,12:251490,13:64215,14:48723,15:36877,16:40171,17:57807,18:16440,19:31818


chrom: chr3
strand: -
right_annotated: ENSMUSG00000052539.15:Magi3:protein_coding:6773
samples:
,0:80241,1:53405,2:187254,3:83575,4:90983,5:153135,6:262018,7:74500,8:103407,9:150525,10:47160,11:299143,12:4969,13:15543,14:282,15:6574,16:80,17:11030,18:2389,19:4335


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106453.1:Gm9273:processed_pseudogene:715
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000032913.13:Lrig2:protein_coding:7115
samples:
,0:82119,1:54455,2:154328,3:101192,4:73568,5:150791,6:1400565,7:144311,8:459824,9:239300,10:36449,11:119713,12:2940,13:16204,14:35579,15:46856,16:70852,17:10980,18:75335,19:46653


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105304.1:Gm43696:sense_intronic:6071
samples:
,0:450,1:123,2:1577,3:487,4:425,5:1239,6:328225,7:67644,8:160007,9:43962,10:121005,11:766464,12:164543,13:169163,14:97,15:4187,16:9703,17:12009,18:9480,19:6128


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104973.1:A530041M06Rik:sense_intronic:2288
samples:
,0:300,1:200,2:700,3:199,4:200,5:599,6:33118,7:23480,8:58070,9:7050,10:21,11:281295,12:57,15:5342,16:4247,17:7421,18:25100,19:1750


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105659.1:4930509H03Rik:sense_intronic:1215
samples:
,0:947,1:884,2:130,4:26,5:230,6:65419,7:11250,8:41,9:16289,11:91104,12:29,13:98,15:2391,16:2634,18:758,19:2277


chrom: chr3
strand: +
right_annotated: ENSMUSG00000032902.1:Slc16a1:protein_coding:4426
samples:
,0:109288,1:64878,2:411788,3:410108,4:260075,5:552706,6:11024,7:5470,8:53537,9:21246,10:3754,12:1934,13:90,14:75177,15:40461,16:50807,17:113031,18:41695,19:35958


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105199.1:Gm43581:sense_intronic:2864
samples:
,0:468,1:311,2:150,3:4,4:200,5:396,6:106694,7:2651,8:33469,9:46278,14:24343,15:4695,16:36,18:3639,19:878


chrom: chr3
strand: -
right_annotated: ENSMUSG00000089999.1:Gm6485:transcribed_processed_pseudogene:439
samples:
,0:89115,1:56995,2:158333,3:87460,4:62404,5:92956,6:1275262,7:254784,8:1529248,9:1200646,10:1592771,11:1295675,12:276280,13:184162,14:44637,15:19867,16:47567,17:51856,18:89919,19:57141


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105195.1:Gm43584:processed_transcript:605
samples:
,0:34708,1:21679,2:46064,3:25141,4:17595,5:26459,6:53288,7:11959,8:123390,9:93145,10:64954,11:89591,12:13775,13:11413,14:28360,15:15094,16:31605,17:34965,18:62374,19:36861


chrom: chr3
strand: -
right_annotated: ENSMUSG00000055865.8:Fam19a3:protein_coding:4316
samples:
,0:26419,1:17492,2:550,3:150,4:305,5:399,6:23928,7:3760,8:1431,9:4606,10:146,11:212080,12:12799,13:33288


chrom: chr3
strand: +
right_annotated: ENSMUSG00000002233.13:Rhoc:protein_coding:1268
samples:
,0:8713,1:4759,2:275441,3:237009,4:177969,5:237129,6:807640,7:112344,8:406122,9:311956,10:92719,11:78320,12:55279,13:64435,14:386,18:1565


chrom: chr3
strand: -
right_annotated: ENSMUSG00000002227.15:Mov10:protein_coding:3760
samples:
,0:51233,1:34161,2:271507,3:211031,4:193160,5:423602,6:110891,7:12285,8:60926,9:12816,10:53458,11:322065,12:71954,13:80327,15:9326,16:2811,18:11625,19:2020


chrom: chr3
strand: -
right_annotated: ENSMUSG00000070372.11:Capza1:protein_coding:3193
samples:
,0:527645,1:354963,2:466975,3:164502,4:115886,5:226293,6:1306258,7:234886,8:636473,9:526531,10:686629,11:1760827,12:140448,13:134536,14:25929,15:21401,16:36645,17:59680,18:66225,19:21293


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106251.1:Gm42658:sense_intronic:1575
samples:
,0:300,1:650,2:3113,3:1397,4:897,5:3239,6:2045,7:672,8:216,9:16399,10:73,11:526,12:66,16:37,18:53,19:398


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105655.1:Gm42659:sense_intronic:1754
samples:
,0:768,1:500,2:3894,3:1662,4:3273,5:4350,6:800874,7:67527,8:116129,9:101380,10:11497,11:300597,12:6604,13:501,14:38,15:2050,16:2923,18:1808,19:1298


chrom: chr3
strand: +
right_annotated: ENSMUSG00000045576.16:St7l:protein_coding:5728
samples:
,0:105730,1:65092,2:169287,3:58720,4:43680,5:63800,6:364464,7:64346,8:238023,9:117840,10:420134,11:68919,12:2218,13:1763,14:111741,15:43613,16:60761,17:95793,18:106008,19:65172


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106105.1:Gm4525:processed_pseudogene:254
samples:
,0:149,1:148,2:1412,3:858,4:427,5:505,6:20241,7:5420,8:17052,9:11004,10:18969,11:9824,12:1559,13:1890,14:148,15:192,16:383,17:159,18:659,19:572


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027840.5:Wnt2b:protein_coding:3318
samples:
,0:4376,1:4203,2:248091,3:152639,4:89173,5:75570,6:876,7:584,8:669,10:4176,15:10245,16:26413,17:1266,18:4718,19:1513


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105355.1:Gm40117:antisense_RNA:369
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000062127.11:Cttnbp2nl:protein_coding:4998
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000040896.16:Kcnd3:protein_coding:7598
samples:
,0:33632,1:17495,2:57875,3:38135,4:213448,5:430490,6:131237,7:4261,9:1460,14:51975,15:24019,16:12198,17:32058,18:5185,19:18870


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027905.15:Ddx20:protein_coding:2905
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000048458.8:Fam212b:protein_coding:4781
samples:
,0:1797,1:1480,2:10550,3:5472,4:6225,5:8853,6:236118,7:18190,8:22955,9:70416,10:57805,11:154334,12:36599,13:11340,14:109510,15:107855,16:170241,17:84030,18:75559,19:57688


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068798.10:Rap1a:protein_coding:2407
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000000563.17:Atp5f1:protein_coding:1604
samples:
,0:215461,1:131369,2:889781,3:470970,4:199455,5:299950,6:4580705,7:853499,8:2415288,9:1673381,10:2181227,11:4267316,12:334986,13:441114,14:511014,15:354265,16:628740,17:585274,18:634101,19:415627


chrom: chr3
strand: +
right_annotated: ENSMUSG00000000561.14:Wdr77:protein_coding:3682
samples:
,0:148603,1:94793,2:344633,3:200149,4:128742,5:197934,6:732245,7:113962,8:321244,9:352898,10:454211,11:1283498,12:90130,13:159380,14:86153,15:69722,16:104511,17:118563,18:129409,19:110526


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105852.4:Gm42890:processed_transcript:2566
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000074340.9:Ovgp1:protein_coding:2616
samples:
,0:46944,1:29874,2:6733,3:5575,4:15017,5:4680,6:77976,7:6282,8:11577,10:87,11:6,13:498,14:4388,15:555,16:14507,17:12005,18:12899,19:4700


chrom: chr3
strand: -
right_annotated: ENSMUSG00000010136.14:Pifo:protein_coding:1127
samples:
,0:307053,1:192986,2:650,3:597,4:1594,5:1183,6:1215551,7:250901,8:425564,9:384933,10:720259,11:146783,12:15306,13:149543,15:1592,18:412


chrom: chr3
strand: +
right_annotated: ENSMUSG00000092072.3:Gm4540:processed_pseudogene:429
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000062778.12:Chia1:protein_coding:1681
samples:
,0:1495,1:982,3:350,4:779,5:228,6:85877,7:15743,8:114,9:43963,11:222269,13:2216,14:785,15:50,18:330,19:1050


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027901.12:Dennd2d:protein_coding:4321
samples:
,0:1533,1:528,2:28636,3:18676,4:8986,5:6432,6:55269,7:9096,8:2828,9:14754,10:1178,11:88479,12:760,13:176,14:1763,15:279,16:420,17:425,18:2991,19:797


chrom: chr3
strand: -
right_annotated: ENSMUSG00000040774.15:Cept1:protein_coding:3059
samples:
,0:12784,1:7147,2:318009,3:150806,4:75834,5:104398,6:953930,7:197490,8:575955,9:240258,10:192896,11:1295506,12:1453,13:6927,14:165669,15:53742,16:116902,17:125652,18:48001,19:62251


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027900.15:Dram2:protein_coding:3271
samples:
,0:11075,1:6992,2:354049,3:149535,4:82270,5:123034,6:952862,7:206420,8:278621,9:270613,10:672168,11:1024666,12:60198,13:100500,14:106871,15:34060,16:29191,17:74216,18:51426,19:33412


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105272.1:Gm43071:TEC:2032
samples:
,0:496,1:200,2:10355,3:2656,4:2491,5:4177,6:34378,7:4245,8:3252,9:31267,11:46983,15:47,16:3138,17:1153,18:500


chrom: chr3
strand: +
right_annotated: ENSMUSG00000056260.15:Lrif1:protein_coding:3296
samples:
,0:342279,1:232450,2:134294,3:64630,4:49807,5:109138,6:656152,7:94999,8:218419,9:122982,10:42276,11:105727,13:13681,14:21925,15:21006,16:40113,17:46883,18:11243,19:9984


chrom: chr3
strand: +
right_annotated: ENSMUSG00000102780.1:Gm38253:TEC:4678
samples:
,0:3420,1:1550,2:7636,3:3992,4:4124,5:8873,6:97280,7:26400,8:35717,9:25382,11:95,14:92,15:400,17:50,18:3292,19:87


chrom: chr3
strand: +
right_annotated: ENSMUSG00000056145.5:AI504432:lincRNA:5569
samples:
,0:1995,1:688,2:3116,3:1400,4:16171,5:45061,6:1607,7:3777,10:7140,14:7671,15:2576,16:8021,17:4600,19:3224


chrom: chr3
strand: +
right_annotated: ENSMUSG00000040724.5:Kcna2:protein_coding:11906
samples:
,0:5099,1:4184,2:735,3:950,4:1795,5:1697,6:174454,7:35299,8:28537,9:17529,10:141,11:43880,12:17518,13:24510,14:87909,15:65559,16:142934,17:83713,18:159174,19:86487


chrom: chr3
strand: +
right_annotated: ENSMUSG00000087260.5:Lamtor5:protein_coding:884
samples:
,0:50406,1:34788,2:201620,3:123290,4:79598,5:131755,6:945527,7:189547,8:623810,9:400643,10:717864,11:322844,12:78154,13:88995,14:86824,15:53788,16:100017,17:71862,18:94881,19:42475


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027896.15:Slc16a4:protein_coding:2546
samples:
,0:6647,1:4066,2:32843,3:24645,4:36022,5:114232,6:48619,7:28899,8:37044,9:11628,11:33,12:70,14:453,16:778,18:1083,19:434


chrom: chr3
strand: -
right_annotated: ENSMUSG00000048109.10:Rbm15:protein_coding:4343
samples:
,0:88233,1:54566,2:79414,3:52973,4:41922,5:81131,6:1236936,7:128924,8:404464,9:310386,10:43701,11:196420,12:7799,13:783,14:7512,15:16202,16:21394,17:36038,18:22472,19:13283


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027895.9:Kcnc4:protein_coding:3667
samples:
,0:59,1:78,2:3152,3:1347,4:847,5:1574,6:90,7:325,14:180383,15:130205,16:203035,17:201188,18:193916,19:142428


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027894.14:Slc6a17:protein_coding:6322
samples:
,0:7055,1:3846,2:3933,3:1100,4:4463,5:2740,6:141439,7:18423,8:68306,9:53380,10:5012,11:173731,12:772,13:4863,14:170733,15:239070,16:319001,17:239706,18:178465,19:268577


chrom: chr3
strand: -
right_annotated: ENSMUSG00000014601.13:Strip1:protein_coding:3215
samples:
,0:86112,1:48577,2:247573,3:132219,4:134294,5:249481,6:321598,7:49919,8:162386,9:93973,10:26773,11:297471,12:17989,14:142426,15:176086,16:254783,17:185652,18:206601,19:157976


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027893.14:Ahcyl1:protein_coding:3863
samples:
,0:242481,1:154626,2:890473,3:501352,4:319214,5:514015,6:1821135,7:448889,8:169817,9:393112,10:266406,11:1038903,12:168533,13:65264,14:135183,15:84800,16:199735,17:85992,18:229902,19:143501


chrom: chr3
strand: -
right_annotated: ENSMUSG00000014599.10:Csf1:protein_coding:4720
samples:
,0:10905,1:6871,2:57663,3:37537,4:118154,5:132669,6:16534,7:4367,8:172,9:482,15:295,16:2,18:292,19:2


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105944.1:Gm5075:processed_pseudogene:622
samples:
,0:22039,1:12682,2:95449,3:62837,4:24410,5:30091,6:96760,7:18515,8:91576,9:76686,10:166968,11:71791,12:20019,13:9064,14:6477,15:2842,16:4478,17:2868,18:3913,19:3462


chrom: chr3
strand: +
right_annotated: ENSMUSG00000040600.9:Eps8l3:protein_coding:2271
samples:
,0:183572,1:121049,2:26526,3:14195,4:7523,5:11240,6:29622,7:2429,8:226,9:6259,10:9963,11:13578,12:17269,13:15231,14:28988,15:15213,16:30445,17:33777,18:14365,19:13470


chrom: chr3
strand: -
right_annotated: ENSMUSG00000086968.8:4933431E20Rik:antisense_RNA:6171
samples:
,0:793612,1:490737,2:122339,3:76204,4:41001,5:60109,6:496152,7:118378,8:228733,9:200260,10:250995,11:330125,12:136643,13:130568,14:156082,15:80654,16:158502,17:163434,18:96255,19:85428


chrom: chr3
strand: +
right_annotated: ENSMUSG00000004032.10:Gstm5:protein_coding:996
samples:
,0:5651609,1:3713361,2:253770,3:217521,4:127922,5:174884,6:2031181,7:515015,8:1332850,9:1126206,10:1681041,11:1640664,12:253971,13:274970,14:182503,15:117438,16:153867,17:164884,18:246160,19:170325


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105872.1:Gm9515:unprocessed_pseudogene:647
samples:
,0:1768,1:1044,2:3889,3:3473,4:7287,5:12734,6:742,7:224,8:691,9:430,10:729,11:706,12:90,13:1444,18:122


chrom: chr3
strand: -
right_annotated: ENSMUSG00000004035.12:Gstm7:protein_coding:1458
samples:
,0:128340,1:78084,2:125339,3:118136,4:715242,5:1294206,6:692749,7:129130,8:543615,9:372173,10:526982,11:576073,12:160013,13:101044,14:16,15:1318,17:4641,18:4


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068762.11:Gstm6:protein_coding:1237
samples:
,0:109562,1:61811,2:84454,3:48793,4:765346,5:1759082,6:14363,7:569,8:306,9:309,10:815,11:40124,12:23129,13:3731,14:8,15:3672,16:8,18:36,19:2448


chrom: chr3
strand: -
right_annotated: ENSMUSG00000089664.2:Gm12494:unprocessed_pseudogene:521
samples:
,0:4125,1:3534,2:3523,3:2165,4:30833,5:69168,6:602,7:62,8:184,9:137,10:887,11:2493,12:856,13:112,15:171,19:272


chrom: chr3
strand: -
right_annotated: ENSMUSG00000004038.9:Gstm3:protein_coding:1311
samples:
,0:7231,1:4266,2:9932,3:10416,4:43596,5:81232,6:23515,7:4668,8:10856,9:7678,10:16917,11:11308,12:7921,13:5663,15:92,17:89,18:47,19:16


chrom: chr3
strand: +
right_annotated: ENSMUSG00000049231.6:Gm12497:processed_pseudogene:237
samples:
,0:376,1:398,2:4185,3:1747,4:1015,5:1058,6:549,7:69,8:849,9:756,10:609,11:388,12:194,13:92,14:3363,15:1448,16:2187,17:2807,18:2533,19:1756


chrom: chr3
strand: -
right_annotated: ENSMUSG00000040562.12:Gstm2:protein_coding:1192
samples:
,0:355929,1:183428,2:825192,3:925116,4:1647749,5:2686790,6:184984,7:44256,8:209762,9:121096,10:175800,11:130432,12:1037,13:1000,14:150,15:379,16:231,17:1759,18:123,19:169


chrom: chr3
strand: -
right_annotated: ENSMUSG00000058135.12:Gstm1:protein_coding:1367
samples:
,0:714620,1:386305,2:1082774,3:1156567,4:3045100,5:4957995,6:1166655,7:238743,8:670241,9:515299,10:1052650,11:556285,12:284865,13:272594,14:4410,15:42,17:6488,18:5353,19:4179


chrom: chr3
strand: -
right_annotated: ENSMUSG00000087357.1:Gm12498:lincRNA:2458
samples:
,0:5426,1:4079,2:13338,3:9169,4:7673,5:12091,6:21720,7:3129,8:19534,9:14777,10:27582,11:26641,12:15704,13:10093,14:12030,15:5684,16:9429,17:11339,18:12893,19:9499


chrom: chr3
strand: +
right_annotated: ENSMUSG00000083627.1:Gm12502:processed_pseudogene:444
samples:
,0:5548,1:4115,2:13296,3:9209,4:7725,5:12537,6:22179,7:2976,8:19899,9:14956,10:28092,11:27027,12:15478,13:10426,14:12347,15:5984,16:9610,17:11514,18:13156,19:8658


chrom: chr3
strand: -
right_annotated: ENSMUSG00000081688.1:Gm12499:unprocessed_pseudogene:546
samples:
,0:1196,1:1059,2:3748,3:3794,4:7178,5:11789,6:2450,7:703,8:3380,9:2407,10:2412,11:2121,16:28,18:42,19:585


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027890.17:Gstm4:protein_coding:1707
samples:
,0:41927,1:23147,2:69068,3:59578,4:82614,5:129708,6:127584,7:23803,8:53073,9:29340,10:162050,11:285321,12:35311,13:97644,14:19091,15:5950,16:20569,17:19670,18:27405,19:28223


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027889.17:Ampd2:protein_coding:3827
samples:
,0:21075,1:14348,2:246289,3:191567,4:63397,5:66859,6:137446,7:20348,8:86445,9:15908,11:247252,12:247757,13:26499,14:145694,15:52346,16:117442,17:57512,18:43747,19:41312


chrom: chr3
strand: +
right_annotated: ENSMUSG00000056411.2:Gm12500:antisense_RNA:2428
samples:
,0:1567,1:1146,2:11787,3:7652,4:2969,5:3147,6:145,9:290,12:14251,13:1800,14:227,15:221,16:692,17:6,18:378


chrom: chr3
strand: -
right_annotated: ENSMUSG00000000001.4:Gnai3:protein_coding:3262
samples:
,0:197872,1:110825,2:1077577,3:606334,4:476001,5:853918,6:1473004,7:350790,8:563784,9:403845,10:391893,11:2466874,12:472982,13:215048,14:95031,15:23111,16:66744,17:106372,18:96358,19:61454


chrom: chr3
strand: -
right_annotated: ENSMUSG00000046793.8:Gpr61:protein_coding:3686
samples:
,0:9381,1:6564,2:626,3:104,4:200,5:133,8:13,12:2667,14:29581,15:53095,16:70045,17:44247,18:24390,19:19014


chrom: chr3
strand: +
right_annotated: ENSMUSG00000050947.9:Amigo1:protein_coding:5540
samples:
,0:6188,1:4014,2:181260,3:56480,4:22719,5:20984,6:39553,7:9900,8:1958,9:11983,10:449736,11:131,12:3338,13:804,14:68387,15:43422,16:129458,17:119694,18:51549,19:46712


chrom: chr3
strand: -
right_annotated: ENSMUSG00000048796.7:Cyb561d1:protein_coding:4708
samples:
,0:16581,1:12252,2:273719,3:47558,4:27406,5:48164,6:104379,7:2009,8:2313,9:1678,14:44416,15:16271,16:34497,17:15267,18:26210,19:19608


chrom: chr3
strand: -
right_annotated: ENSMUSG00000048997.17:Atxn7l2:protein_coding:3044
samples:
,0:17290,1:15512,2:52088,3:29442,4:13264,5:20597,6:35533,7:6067,8:61127,9:1874,11:85199,12:46149,13:11259,14:778,15:10465,16:13974,17:28574,18:9484,19:8477


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105961.1:Gm40123:lincRNA:1027
samples:
,0:3165,1:1525,2:12583,3:8549,4:9926,5:17246,6:43297,7:3188,8:932,9:4551,10:567,11:488,13:82,14:3595,15:1395,16:1210,17:1221,18:1410,19:2010


chrom: chr3
strand: -
right_annotated: ENSMUSG00000083462.1:Gm12501:processed_pseudogene:529
samples:
,0:2892,1:1267,2:12650,3:8593,4:9920,5:17272,6:29487,7:1661,8:921,9:3280,10:585,11:519,13:87,14:3120,15:1410,16:1091,17:1239,18:1431,19:2031


chrom: chr3
strand: +
right_annotated: ENSMUSG00000068749.9:Psma5:protein_coding:1239
samples:
,0:27365,1:17432,2:124903,3:82400,4:37704,5:59768,6:1122190,7:240198,8:915817,9:641465,10:1541353,11:1193307,12:208973,13:176969,14:104483,15:77110,16:98202,17:113970,18:133350,19:91682


chrom: chr3
strand: +
right_annotated: ENSMUSG00000068747.14:Sort1:protein_coding:6904
samples:
,0:651203,1:427483,2:145476,3:66637,4:623906,5:1362152,6:1019048,7:113738,8:200951,9:207968,10:138618,11:271515,12:183539,13:53673,14:167010,15:144976,16:187363,17:296921,18:173430,19:161894


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068740.13:Celsr2:protein_coding:10598
samples:
,0:63644,1:40544,2:47046,3:25886,4:12151,5:11049,6:521374,7:49225,8:222313,9:104416,10:161248,11:183951,12:165936,13:18800,14:346489,15:289332,16:442219,17:297646,18:255035,19:247438


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068739.13:Sars:protein_coding:3642
samples:
,0:72858,1:45862,2:368948,3:257980,4:180714,5:290441,6:702640,7:99443,8:506632,9:541870,10:763400,11:1358715,12:461760,13:460388,14:267627,15:238633,16:488026,17:378858,18:539663,19:421251


chrom: chr3
strand: -
right_annotated: ENSMUSG00000040412.16:5330417C22Rik:protein_coding:5836
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105810.1:Gm43435:TEC:1438
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000068732.5:Tmem167b:protein_coding:2948
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000048100.13:Taf13:protein_coding:2443
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000040389.15:Wdr47:protein_coding:4222
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000081499.1:Gm12517:processed_pseudogene:425
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027884.16:Clcc1:protein_coding:3601
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027883.15:Gpsm2:protein_coding:3498
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000049565.16:Aknad1:protein_coding:2603
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027882.18:Stxbp3:protein_coding:3907
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000045326.13:Fndc7:protein_coding:5141
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105175.1:Gm43097:processed_pseudogene:151
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027881.14:Prpf38b:protein_coding:3026
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000045662.16:Henmt1:protein_coding:2451
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000040339.10:Fam102b:protein_coding:5702
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000040322.10:Slc25a24:protein_coding:3431
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000033721.16:Vav3:protein_coding:5218
samples:
,0:79771,1:43713,2:22355,3:11735,4:7769,5:6999,6:475239,7:100487,8:265459,9:64046,10:67927,11:1177367,12:53546,13:26167,14:497,15:70,17:540,18:300


chrom: chr3
strand: -
right_annotated: ENSMUSG00000059857.15:Ntng1:protein_coding:6109
samples:
,0:2181,1:1573,2:39619,3:8973,4:9466,5:6417,6:22321,7:9781,9:980,11:1905,13:32,14:933,15:100,17:174,18:6943,19:200


chrom: chr3
strand: +
right_annotated: ENSMUSG00000082624.1:Gm12535:processed_pseudogene:484
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000049300.11:Prmt6:protein_coding:4194
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105509.1:C130013H08Rik:antisense_RNA:3692
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000106100.1:Gm9314:processed_pseudogene:1528
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105077.1:Gm4859:processed_pseudogene:787
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105785.1:Gm42526:processed_pseudogene:393
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000106666.1:Gm43587:processed_pseudogene:204
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000045952.3:Gm5548:processed_pseudogene:397
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000074264.12:Amy1:protein_coding:2144
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027981.14:Rnpc3:protein_coding:3888
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000105836.1:Gm17954:processed_pseudogene:607
samples:
,0:400,1:392,2:1379,3:405,4:610,5:1853,6:7958,7:905,8:967,9:1244,10:1660,11:1895,12:1037,13:358,14:173,16:215,18:181


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106454.1:Gm17775:processed_pseudogene:258
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000106084.1:Gm18163:processed_pseudogene:1643
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027966.20:Col11a1:protein_coding:7667
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000045092.8:S1pr1:protein_coding:3046
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000054426.11:A930005H10Rik:processed_transcript:787
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000033554.17:Dph5:protein_coding:3246
samples:
,0:14269,1:7360,2:68641,3:44431,4:27717,5:44565,6:226444,7:56682,8:198273,9:90594,10:77079,11:53632,12:28497,13:393,14:73318,15:23095,16:50428,17:40743,18:60985,19:35603


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104803.1:Gm43108:TEC:293
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000054414.4:Slc30a7:protein_coding:9020
samples:
,0:33005,1:21963,2:347951,3:169231,4:92987,5:142411,6:327767,7:79105,8:223965,9:196754,10:122420,11:133286,12:56067,13:43976,14:12724,15:27261,16:29253,17:45949,18:35893,19:26245


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104723.1:Gm43106:processed_pseudogene:637
samples:
,0:2065,1:1891,2:22278,3:9740,4:4665,5:7150,6:2144,8:89,9:6835,11:279,12:4813,14:53,15:1828,16:653,17:1450,18:23,19:744


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105645.1:Gm6649:processed_pseudogene:1165
samples:
,0:4336,1:3001,2:37352,3:19939,4:11141,5:18017,6:629,7:314,8:90,9:11221,11:810,12:7073,15:1615,16:1267,17:754,18:50,19:1167


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027963.14:Extl2:protein_coding:3318
samples:
,0:68019,1:43596,2:180657,3:100454,4:44680,5:73456,6:358191,7:48550,8:197774,9:188746,10:506541,11:643297,12:259088,13:144053,14:220165,15:107741,16:216346,17:232420,18:281744,19:194149


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027962.14:Vcam1:protein_coding:4983
samples:
,0:169704,1:85114,2:96768,3:47315,4:266336,5:185494,6:1243,7:3519,9:29453,11:25624,12:163413,14:3590,17:583,18:398


chrom: chr3
strand: -
right_annotated: ENSMUSG00000068696.6:Gpr88:protein_coding:3469
samples:
,0:8628,1:4546,2:9235,3:5966,4:27445,5:28823,6:65,7:319,14:91,15:3486,16:6918,17:14092,18:25587,19:59183


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033502.14:Cdc14a:protein_coding:4485
samples:
,0:750219,1:508700,2:142012,3:55934,4:24847,5:43363,6:1684171,7:308670,8:318041,9:269195,10:7588,11:11849,12:105264,13:536,14:2023,15:164,18:2208


chrom: chr3
strand: -
right_annotated: ENSMUSG00000000339.14:Rtca:protein_coding:1594
samples:
,0:263408,1:172273,2:143182,3:81842,4:55838,5:104196,6:364328,7:73484,8:133117,9:136825,10:202826,11:227538,12:57626,13:342,14:133252,15:111737,16:184886,17:169964,18:244362,19:157228


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097737.1:Gm26530:lincRNA:3941
samples:
,0:96727,1:65447,2:63486,3:30407,4:23123,5:45764,6:408889,7:53566,8:88731,9:75935,10:108268,11:96970,12:27304,13:342,14:59853,15:40624,16:68729,17:59564,18:98297,19:57161


chrom: chr3
strand: +
right_annotated: ENSMUSG00000000340.10:Dbt:protein_coding:3301
samples:
,0:26821,1:13397,2:308406,3:160734,4:92759,5:156950,6:253762,7:46672,8:104446,9:82087,10:18541,11:6068,12:40409,13:7330,14:670,15:7082,16:9826,17:8476,18:25219,19:26434


chrom: chr3
strand: -
right_annotated: ENSMUSG00000082394.1:Gm4596:processed_pseudogene:442
samples:
,0:35601,1:23593,2:42408,3:22425,4:14433,5:24622,6:76857,7:13653,8:28290,9:34441,10:24256,11:112858,12:10290,13:5554,14:10626,15:4492,16:9465,17:10376,18:12613,19:12422


chrom: chr3
strand: -
right_annotated: ENSMUSG00000034437.8:Gm9761:processed_pseudogene:492
samples:
,0:75401,1:44704,2:303125,3:192127,4:84382,5:114288,6:382721,7:77830,8:407870,9:269718,10:451047,11:613398,12:49768,13:79446,14:23066,15:29567,16:38146,17:33289,18:26151,19:23494


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027961.7:Lrrc39:protein_coding:3087
samples:
,0:10954,1:7588,2:45282,3:24002,4:12620,5:22114,6:38985,7:25503,8:35188,9:60849,10:61391,11:58709,12:35826,13:1266,14:4596,15:4460,16:2886,17:7058,18:500,19:2813


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033439.12:Trmt13:protein_coding:4082
samples:
,0:62401,1:38348,2:66664,3:40420,4:23263,5:41785,6:110460,7:49644,8:118064,9:148667,10:139205,11:274128,12:53555,13:3228,14:12958,15:16349,16:15369,17:18691,18:5702,19:8994


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027959.13:Sass6:protein_coding:2641
samples:
,0:244921,1:160772,2:39302,3:32318,4:9418,5:17727,6:92067,7:12082,8:35333,9:8148,11:169,14:542,15:8791,16:5581,17:10516,18:11058,19:19331


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106415.1:Gm42893:antisense_RNA:1502
samples:
,0:11698,1:5825,2:13570,3:10472,4:3190,5:5072,6:115116,7:25653,8:95228,9:43853,10:41548,11:75864,13:29,14:2490,15:5177,16:2307,17:1376,18:9219,19:5616


chrom: chr3
strand: -
right_annotated: ENSMUSG00000089911.4:Mfsd14a:protein_coding:2782
samples:
,0:493258,1:307950,2:515202,3:214604,4:153145,5:287618,6:993386,7:153240,8:256654,9:263353,10:698261,11:350842,12:321493,13:3346,14:260795,15:83036,16:215382,17:273032,18:143644,19:116552


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105339.1:Gm42457:antisense_RNA:367
samples:
,0:32236,1:20026,2:81525,3:32804,4:21672,5:43118,6:182437,7:30733,8:44318,9:33044,10:105393,11:70941,12:38273,13:2,14:36430,15:12444,16:30676,17:35284,18:22395,19:15488


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105103.1:Gm43191:protein_coding:704
samples:
,0:130796,1:77289,2:111573,3:48715,4:36642,5:63733,6:124259,7:7300,8:38435,9:39333,10:120519,11:52364,12:64197,14:44550,15:14483,16:36912,17:51184,18:22648,19:23369


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027957.13:Slc35a3:protein_coding:5893
samples:
,0:93827,1:64339,2:241956,3:106316,4:79756,5:142459,6:1011655,7:153019,8:249643,9:228311,10:41141,11:5301,12:50139,13:2266,14:6169,15:12506,16:21451,17:7763,18:6123,19:13293


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033400.14:Agl:protein_coding:9963
samples:
,0:49345,1:34268,2:163206,3:106114,4:62119,5:85730,6:243672,7:59939,8:132702,9:32012,10:1525,11:356522,12:1384,13:36787,15:2651,16:4886,17:11661,18:18523,19:8162


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105250.1:Gm29736:processed_pseudogene:385
samples:
,2:244,3:410,4:68,5:73,6:340,7:182,8:609,9:508,10:801,11:472,12:91,13:169,14:32,15:20,16:36,17:66,18:166


chrom: chr3
strand: +
right_annotated: ENSMUSG00000033386.10:Frrs1:protein_coding:7083
samples:
,0:3241,1:1287,2:81905,3:44902,4:14187,5:15878,6:464609,7:54954,8:310253,9:160236,10:49545,11:651311,12:114025,13:58909,15:150,18:193


chrom: chr3
strand: -
right_annotated: ENSMUSG00000033377.14:Palmd:protein_coding:3810
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000105914.1:Gm19243:processed_pseudogene:269
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000044667.12:Plppr4:protein_coding:5696
samples:
,0:16570,1:8577,2:18484,3:17542,4:250508,5:558146,6:160304,7:29532,8:75108,9:110221,14:642498,15:492197,16:688247,17:644106,18:637384,19:537048


chrom: chr3
strand: +
right_annotated: ENSMUSG00000033342.13:Plppr5:protein_coding:4685
samples:
,0:8711,1:7058,2:6367,3:4335,4:27306,5:87368,6:181762,7:50952,8:88928,9:196801,11:9444,12:298,14:38662,15:19142,16:39731,17:84983,18:32795,19:30169


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028007.13:Snx7:protein_coding:2033
samples:
,0:26472,1:16003,2:76560,3:46043,4:115689,5:249273,6:137703,7:18749,8:89823,9:33067,10:263241,11:479344,12:61132,13:71776,14:44457,15:22446,16:36773,17:47604,18:6092,19:12349


chrom: chr3
strand: +
right_annotated: ENSMUSG00000033308.16:Dpyd:protein_coding:4694
samples:
,0:19261,1:9671,2:142002,3:91018,4:57340,5:70075,6:158742,7:38332,8:85230,9:62502,10:135182,11:515320,12:13281,13:12797,15:50,16:2570,18:388,19:1443


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106037.1:Gm4332:processed_pseudogene:346
samples:
,0:384521,1:266504,2:1250207,3:896074,4:318758,5:360990,6:1498690,7:397757,8:947419,9:750148,10:2505965,11:1083724,12:234403,13:177269,14:9545,15:11087,16:13586,17:7827,18:12219,19:12637


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028134.11:Ptbp2:protein_coding:4913
samples:
,0:381734,1:227741,2:249262,3:133365,4:67047,5:118655,6:1085999,7:238912,8:365864,9:198929,10:386484,11:340240,12:41031,13:495,14:196065,15:94095,16:192527,17:171926,18:156783,19:117457


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105572.1:Gm43300:TEC:2043
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000106099.1:Gm42664:sense_intronic:3239
samples:
,0:3740,1:2250,2:27234,3:14702,4:13986,5:26926,6:77503,7:12406,8:876,9:5266,10:208097,11:218289,15:2078,17:50,19:5064


chrom: chr3
strand: -
right_annotated: ENSMUSG00000098097.7:6530403H02Rik:lincRNA:4009
samples:
,0:22,1:136,3:347,4:244,6:79952,7:22679,8:44144,9:24012,10:78,11:16471,12:4893,13:3839,15:1057,16:1002,17:325,18:4337,19:3274


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105207.1:Gm42927:processed_pseudogene:3841
samples:
,0:200,1:150,3:50,5:82,6:988,7:172,8:360,9:360,10:747,11:1588,12:90,14:100,15:450,16:350,17:50,18:400


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105243.1:Gm43444:TEC:291
samples:
,2:992,3:2204,4:1477,5:1572,6:8177,7:1133,8:2606,9:2537,10:4162,11:1493,12:2108,13:726,14:1150,15:798,16:1100,17:1250,18:2337,19:650


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028133.17:Rwdd3:protein_coding:1829
samples:
,0:4288,1:2139,2:35311,3:30168,4:13556,5:30850,6:158033,7:25974,8:60003,9:97973,10:112404,11:73878,12:23091,13:72970,14:4957,15:499,16:794,17:4686,18:3244,19:5452


chrom: chr3
strand: -
right_annotated: ENSMUSG00000098042.1:Gm5710:processed_pseudogene:995
samples:
,0:101,1:200,2:179,3:204,5:83,6:238,7:89,8:33430,9:88,10:89,11:289,12:74,14:100,15:227,16:43,17:95,18:2049


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028132.15:Tmem56:protein_coding:7463
samples:
,0:579003,1:359275,2:927567,3:6551,4:4011,5:6723,6:123482,7:78920,8:59235,9:42478,10:99638,11:71604,14:112919,15:137577,16:176437,17:136829,18:81840,19:79496


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106619.1:Gm9353:processed_pseudogene:604
samples:
,0:2136,1:750,2:2591,3:1926,4:1700,5:2800,6:2782,7:529,8:1824,9:1620,10:3601,11:2339,12:157,14:221,15:321,16:2226,17:250,18:500,19:750


chrom: chr3
strand: +
right_annotated: ENSMUSG00000039887.11:Alg14:protein_coding:2037
samples:
,0:10225,1:5485,2:207647,3:56304,4:59739,5:103719,6:833974,7:138519,8:458048,9:296343,10:409991,11:335447,12:51838,13:33388,14:36307,15:6167,16:20890,17:13957,18:25618,19:15652


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106455.1:Gm5711:processed_pseudogene:421
samples:
,0:149,2:190,3:221,4:145,5:100,6:2564,7:1007,8:2014,9:1137,10:4014,11:2729,12:357,13:177,14:99,16:36,18:33,19:49


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105813.1:Gm42928:TEC:3339
samples:
,0:2619,1:943,2:173539,3:108992,4:104482,5:146433,6:190741,7:26931,8:183639,9:148732,10:375000,11:352186,12:117363,13:21854,14:900,16:660,17:356,18:471,19:647


chrom: chr3
strand: +
right_annotated: ENSMUSG00000053931.11:Cnn3:protein_coding:2049
samples:
,0:22507,1:9100,2:1526664,3:945263,4:859656,5:1308528,6:6186986,7:1248528,8:3063254,9:2499519,10:5036361,11:5671920,12:1500037,13:398293,14:9684,15:2045,16:5849,17:6596,18:7429,19:8609


chrom: chr3
strand: -
right_annotated: ENSMUSG00000039865.8:Slc44a3:protein_coding:2620
samples:
,0:6743,1:2797,2:202174,3:113612,4:59210,5:84614,6:878275,7:114626,8:689478,9:276929,10:778669,11:1348764,12:239678,13:73209


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097124.2:A530020G20Rik:antisense_RNA:3660
samples:
,0:8584,1:3583,2:404426,3:297613,4:136600,5:155416,6:40111,7:19326,8:81693,9:11571,10:120896,11:42390,12:35364,13:3982


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028128.13:F3:protein_coding:1872
samples:
,0:8035,1:5618,2:62224,3:104188,4:103349,5:187685,6:1292975,7:244554,8:741351,9:566866,10:243672,11:274592,12:51774,14:15952,17:7185,18:5070,19:6430


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028127.10:Abcd3:protein_coding:3622
samples:
,0:83115,1:48227,2:457200,3:253436,4:375633,5:759971,6:1076303,7:244125,8:557491,9:462930,10:230931,11:2600367,12:155577,13:104205,14:25284,15:81034,16:104135,17:68658,18:75131,19:72992


chrom: chr3
strand: +
right_annotated: ENSMUSG00000039831.16:Arhgap29:protein_coding:5787
samples:
,0:1460072,1:995469,2:2591765,3:1353407,4:622413,5:896034,6:178938,7:12535,8:24361,9:4915,10:100,11:8703,12:90,13:89,14:6218,15:10372,16:21244,17:10162,18:7720,19:6516


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028125.14:Abca4:protein_coding:7317
samples:
,0:4598,1:2338,2:136224,3:69247,4:24783,5:34792,6:414,7:674,8:2901,12:4214,13:1406,14:669,15:1161,16:164,17:13,18:5376,19:23


chrom: chr3
strand: -
right_annotated: ENSMUSG00000078592.2:Gm4609:processed_pseudogene:1002
samples:
,0:7633,1:4935,2:146464,3:123735,4:48157,5:81339,6:263766,7:44613,8:128681,9:104220,10:136127,11:118553,12:33657,13:24834,14:70658,15:59826,16:116820,17:85862,18:96744,19:97450


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028124.15:Gclm:protein_coding:5589
samples:
,0:91064,1:65985,2:180184,3:78186,4:89542,5:163067,6:351084,7:87122,8:147814,9:127680,10:24281,11:300122,12:42261,13:5951,14:47179,15:16090,16:60598,17:35850,18:45849,19:33377


chrom: chr3
strand: -
right_annotated: ENSMUSG00000057359.7:Gm17494:processed_transcript:1800
samples:
,0:313398,1:184055,2:1407017,3:863971,4:306492,5:412787,6:1591451,7:482599,8:1277630,9:974303,10:2492244,11:1345082,12:225842,13:199189,14:479419,15:272657,16:542684,17:508080,18:592743,19:559497


chrom: chr3
strand: +
right_annotated: ENSMUSG00000093392.1:Gm6061:transcribed_processed_pseudogene:492
samples:
,0:271097,1:157851,2:1214212,3:745675,4:265605,5:358005,6:1340271,7:411369,8:1141765,9:879706,10:2256339,11:1204559,12:200671,13:176527,14:375027,15:207914,16:430175,17:403482,18:475163,19:432282


chrom: chr3
strand: +
right_annotated: ENSMUSG00000039756.12:Dnttip2:protein_coding:2429
samples:
,0:171156,1:101315,2:295449,3:193776,4:133521,5:213003,6:1235106,7:252798,8:575086,9:480173,10:1307129,11:638317,12:90454,13:129421,14:60154,15:48150,16:66633,17:59504,18:140107,19:89093


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028121.8:Bcar3:protein_coding:3311
samples:
,0:32463,1:19448,2:272871,3:191833,4:102578,5:173246,6:82134,7:14843,8:50898,9:66556,10:25467,11:154027,12:74970,14:10053,15:2186,16:10134,18:3478,19:1046


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104574.1:Gm42836:antisense_RNA:728
samples:
,0:1946,1:1442,2:26543,3:18324,4:9449,5:16178,6:748,7:451,8:412,9:649,10:83,11:112,12:1734,13:111,14:76,16:48,17:26,18:23,19:28


chrom: chr3
strand: -
right_annotated: ENSMUSG00000039735.15:Fnbp1l:protein_coding:5372
samples:
,0:163295,1:122495,2:475632,3:249186,4:148035,5:196137,6:1163242,7:231531,8:301541,9:184260,10:464437,11:546365,12:80031,13:71795,14:93556,15:89887,16:139721,17:87555,18:86006,19:48131


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104773.1:Mir7657:miRNA:57
samples:
,0:434,1:444,2:1892,3:664,4:947,5:525,6:9106,7:875,8:984,9:110,12:125,13:563,14:347,15:506,16:836,17:219,18:547,19:224


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106562.1:Gm5981:processed_pseudogene:487
samples:
,0:878,1:449,2:4431,3:2730,4:700,5:891,6:3618,7:1092,8:2100,9:1806,10:3809,11:2881,12:512,13:274,14:3958,15:1193,16:2972,17:2695,18:3499,19:4026


chrom: chr3
strand: +
right_annotated: ENSMUSG00000053965.10:Pde5a:protein_coding:8026
samples:
,0:11676,1:8210,2:221581,3:145011,4:75081,5:72092,6:203075,7:111529,8:119865,9:32467,10:179045,11:2122301,15:272,16:3103,18:3373,19:50


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106059.1:Gm9364:processed_pseudogene:460
samples:
,0:1715,1:1010,2:2611,3:1341,4:1787,5:2647,6:4519,7:287,8:682,9:407,11:1808,12:270,13:430,14:400,15:200,16:500,17:200,18:591,19:450


chrom: chr3
strand: +
right_annotated: ENSMUSG00000054091.9:1810037I17Rik:protein_coding:1160
samples:
,0:41903,1:25528,2:221339,3:137957,4:154046,5:258523,6:836082,7:188146,8:526759,9:452616,10:1043642,11:541967,12:83776,13:41534,14:78024,15:51713,16:73542,17:80095,18:67079,19:45187


chrom: chr3
strand: -
right_annotated: ENSMUSG00000039701.11:Usp53:protein_coding:8059
samples:
,0:74932,1:50353,2:287265,3:181066,4:259569,5:521964,6:577872,7:103165,8:232623,9:110953,10:26,11:422743,12:5111,13:72,14:14738,15:17555,16:24752,17:26580,18:42816,19:33571


chrom: chr3
strand: -
right_annotated: ENSMUSG00000050315.13:Synpo2:protein_coding:12992
samples:
,0:5762,1:2417,2:32592,3:38134,4:24309,5:24375,6:251186,7:30746,8:25506,9:27993,10:48805,11:5940,12:1711,14:877,16:115,18:11033,19:100


chrom: chr3
strand: +
right_annotated: ENSMUSG00000039234.11:Sec24d:protein_coding:4003
samples:
,0:15029,1:8715,2:379911,3:222980,4:112620,5:130839,6:656351,7:74314,8:167960,9:86381,10:66613,11:327132,12:2162,14:17348,15:3421,16:17297,17:19818,18:10238,19:24265


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028114.16:Mettl14:protein_coding:7374
samples:
,0:39120,1:21502,2:127318,3:78472,4:52078,5:97772,6:82274,7:30024,8:51055,9:63586,10:25204,11:155157,12:38821,13:75410,14:22505,15:31818,16:28824,17:10275,18:13536,19:16078


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027978.9:Prss12:protein_coding:2602
samples:
,0:1198,1:753,2:7490,3:3849,4:60464,5:104122,7:1029,14:63237,15:41539,16:104972,17:144909,18:38633,19:79673


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105058.1:Gm43590:TEC:387
samples:
,0:50,1:100,2:117,4:100,6:730,7:155,8:405,9:180,10:90,11:115,12:90,13:66,14:50,15:15,16:50,17:111,18:50,19:53


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104960.1:Snhg8:processed_transcript:604
samples:
,0:29773,1:16779,2:108718,3:57668,4:35732,5:50198,6:352837,7:86646,8:182097,9:197908,10:889005,11:302750,12:35797,13:24267,14:5532,15:5979,16:14663,17:9816,18:10503,19:10642


chrom: chr3
strand: -
right_annotated: ENSMUSG00000092730.1:Snora24:snoRNA:130
samples:
,0:199,1:101,2:5023,3:1648,4:1340,5:2040,6:10061,7:1712,8:5468,9:4792,10:13169,11:14556,12:4204,13:3702,14:372,15:25,16:142,18:184,19:188


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104670.1:Gm9369:processed_pseudogene:733
samples:
,0:1297,1:732,2:1243,3:127,4:458,5:1003,6:1482,7:123,8:1424,9:1292,10:2809,11:2301,12:508,13:142,14:380,15:446,16:1238,17:396,18:934,19:244


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027977.15:Ndst3:protein_coding:6240
samples:
,0:73553,1:49042,2:598,3:200,4:734,5:1785,6:13419,7:237,10:7000,11:71661,14:17518,15:29368,16:17721,17:49727,18:22621,19:13204


chrom: chr3
strand: +
right_annotated: ENSMUSG00000090474.3:Gm9372:transcribed_processed_pseudogene:430
samples:
,2:196,3:179,4:50,5:92,6:1847,7:1594,8:2321,9:1197,10:1682,11:761,12:261,13:89,14:99,15:47,16:199,19:50


chrom: chr3
strand: +
right_annotated: ENSMUSG00000044528.5:Tram1l1:protein_coding:3889
samples:
,0:2027,1:1597,2:21138,3:5393,4:2888,5:2802,6:4125,7:11366,8:13921,9:27963,10:159345,11:196124,12:2322,13:1125,14:215618,15:137724,16:142885,17:233687,18:117818,19:113078


chrom: chr3
strand: +
right_annotated: ENSMUSG00000096544.2:Gm4617:processed_pseudogene:331
samples:
,0:72546,1:30141,2:1071507,3:767311,4:285454,5:381554,6:1939839,7:517633,8:1357825,9:1184981,10:2246354,11:1543871,12:366561,13:316006,14:87252,15:55081,16:99095,17:92725,18:61652,19:50658


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106009.1:Gm9379:processed_pseudogene:646
samples:
,0:542,1:400,2:5565,3:4951,4:1100,5:1685,6:313,7:116,8:709,9:298,10:304,11:305,14:244,15:155,16:300,17:150,18:950,19:510


chrom: chr3
strand: -
right_annotated: ENSMUSG00000032854.12:Ugt8a:protein_coding:4164
samples:
,0:21479,1:9224,2:4742,3:1630,4:750,5:991,6:862175,7:152289,8:251467,9:181604,10:442168,11:1738737,12:61096,13:159545,14:78,15:6824,17:11641,18:25302,19:2275


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106094.1:Gm18916:processed_pseudogene:1246
samples:
,0:1787,1:649,2:4165,3:2393,4:1338,5:1996,6:908,7:379,8:2306,9:1040,10:718,11:515,14:800,15:479,16:1350,17:1050,18:1239,19:450


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105233.1:Gm20568:processed_pseudogene:208
samples:
,0:21282,1:12570,2:122072,3:86103,4:31180,5:34037,6:46476,7:13058,8:33953,9:27003,10:21509,11:10747,12:20668,13:18297,14:1552,15:1750,16:3826,17:2211,18:3808,19:2330


chrom: chr3
strand: +
right_annotated: ENSMUSG00000053819.16:Camk2d:protein_coding:8524
samples:
,0:19885,1:13070,2:315479,3:182724,4:187623,5:331361,6:1849239,7:457652,8:715491,9:529998,10:1428,11:969401,12:24130,13:24342,14:36145,15:14548,16:61609,17:48239,18:84402,19:66819


chrom: chr3
strand: -
right_annotated: ENSMUSG00000032826.17:Ank2:protein_coding:17626
samples:
,0:646385,1:401437,2:169756,3:54846,4:45769,5:74188,6:631895,7:132367,8:201682,9:235652,10:34123,11:18967,13:108524,14:758471,15:898023,16:1119502,17:914541,18:824289,19:832609


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104963.1:Gm42974:TEC:2654
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000027968.11:Larp7:protein_coding:2121
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000051278.12:Zgrf1:protein_coding:8668
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000028028.11:Alpk1:protein_coding:4865
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000089988.2:Gm16238:processed_pseudogene:586
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000046688.14:Tifa:protein_coding:3009
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000074238.6:Ap1ar:protein_coding:2679
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105447.1:Gm43653:antisense_RNA:1608
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000105008.1:Gm43652:TEC:675
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000050549.8:5730508B09Rik:protein_coding:2265
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000074236.3:Gm9387:processed_pseudogene:1320
samples:
,0:5979,1:3534,2:36857,3:19129,4:12099,5:22850,6:81631,7:5571,8:51268,9:23731,10:82229,11:59653,12:23953,13:24236,14:30676,15:10476,16:35743,17:32149,18:29314,19:11657


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028024.14:Enpep:protein_coding:4181
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000106258.1:Rpl7a-ps7:processed_pseudogene:776
samples:
,0:9012,1:6453,2:67981,3:49894,4:17548,5:17449,6:48422,7:7318,8:25148,9:17190,10:34051,11:21881,12:11081,13:4999,14:3785,15:3615,16:6736,17:3317,18:4725,19:5639


chrom: chr3
strand: +
right_annotated: ENSMUSG00000041220.10:Elovl6:protein_coding:6134
samples:
,0:37386,1:20361,2:508637,3:323029,4:25002,5:28336,6:581728,7:132547,8:411830,9:228632,10:256953,11:271947,12:148611,13:144512,14:112168,15:67439,16:109728,17:64299,18:47298,19:18917


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028017.7:Egf:protein_coding:4795
samples:
,0:11674,1:6672,2:9757,3:4281,4:29990,5:68824,6:112680,7:19436,8:70539,9:9103,10:27491,11:127606,12:180,14:873,15:485,17:269,18:92,19:24


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105960.1:6330410L21Rik:antisense_RNA:3871
samples:
,0:1795,1:1885,2:699,3:300,4:1659,5:4188,6:14564,7:10489,9:100,11:8990,13:1113,14:283,15:135,17:50,18:1448


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028010.16:Gar1:protein_coding:1271
samples:
,0:39160,1:20918,2:70733,3:49068,4:50120,5:101777,6:42868,7:3691,8:20623,9:13311,10:85360,11:34872,12:5589,13:5897,14:7070,15:2118,16:6170,17:3587,18:4322,19:3140


chrom: chr3
strand: +
right_annotated: ENSMUSG00000058952.12:Cfi:protein_coding:2079
samples:
,0:1696,1:1297,2:3061,3:3610,4:58788,5:68367,6:199477,7:36790,8:263757,9:125482,10:120,11:656576,12:142374,18:455


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027999.15:Pla2g12a:protein_coding:1674
samples:
,0:79106,1:53605,2:167790,3:51976,4:78885,5:142914,6:228870,7:50862,8:33091,9:77658,10:377038,11:78628,12:58470,13:14541,14:14998,15:9016,16:26656,17:16619,18:28625,19:16727


chrom: chr3
strand: +
right_annotated: ENSMUSG00000027997.9:Casp6:protein_coding:1456
samples:
,0:26330,1:13845,2:521917,3:101483,4:122975,5:242605,6:470466,7:136771,8:439059,9:294542,10:425253,11:583613,12:151581,13:64325,16:2434,17:756,19:190


chrom: chr3
strand: -
right_annotated: ENSMUSG00000001052.15:Sec24b:protein_coding:5128
samples:
,0:505553,1:357544,2:435764,3:182819,4:174988,5:318755,6:558867,7:64939,8:226267,9:101314,10:109437,11:294788,12:359,13:7031,14:81559,15:45848,16:121609,17:122251,18:81822,19:76744


chrom: chr3
strand: +
right_annotated: ENSMUSG00000063328.6:Gm9396:processed_pseudogene:567
samples:
,0:53370,1:30223,2:342537,3:263524,4:112344,5:113555,6:118226,7:33847,8:108182,9:82038,10:291426,11:118239,12:31069,13:21657,14:7688,15:5272,16:10961,17:4151,18:5314,19:5182


chrom: chr3
strand: +
right_annotated: ENSMUSG00000058897.17:Col25a1:protein_coding:6905
samples:
,0:10468,1:6472,2:4990,3:6681,4:2942,5:9735,6:48559,7:29758,8:2648,9:10433,10:3761,12:15929,14:2448,15:10094,16:6655,17:9863,18:14330,19:9850


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105011.1:Gm43210:TEC:6152
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000041084.8:Ostc:protein_coding:1067
samples:
,0:60973,1:38778,2:581806,3:394793,4:206200,5:332394,6:2345861,7:555348,8:1843302,9:1092660,10:1902303,11:2408620,12:227662,13:208291,14:163104,15:62525,16:117831,17:79806,18:61086,19:53640


chrom: chr3
strand: -
right_annotated: ENSMUSG00000062006.12:Rpl34:protein_coding:1101
samples:
,0:118341,1:64726,2:713727,3:38685,4:15589,5:22653,6:1265043,7:305004,8:590957,9:445719,10:1305399,11:458971,12:54511,13:21232,14:20158,15:13092,16:28651,17:20779,18:16056,19:12941


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106260.1:Gm43524:processed_pseudogene:298
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000104984.1:Gm5982:processed_pseudogene:512
samples:
,0:38,1:309,2:274,3:590,4:84,5:83,6:803,7:74,8:1407,9:999,10:2521,11:879,12:734,13:160,14:36,16:88,17:46


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105558.1:Gm5855:processed_pseudogene:1305
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000027985.14:Lef1:protein_coding:3506
samples:
,0:150804,1:101341,2:6066,3:11474,4:4332,5:3742,6:31281,7:7986,8:6228,9:4310,10:58534,11:1002,12:756,15:22


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027984.8:Hadh:protein_coding:1789
samples:
,0:112042,1:58167,2:1041508,3:576366,4:541127,5:1056131,6:1430343,7:161372,8:660774,9:565854,10:1692329,11:1733394,12:245065,13:287626,15:2063,16:4773,17:1231,18:79,19:1025


chrom: chr3
strand: -
right_annotated: ENSMUSG00000027983.13:Cyp2u1:protein_coding:4607
samples:
,0:15335,1:6881,2:9552,3:4572,4:2332,5:2037,6:169868,7:71349,8:61218,9:14200,10:2508,11:6233,12:12722,14:20442,15:23595,16:18314,17:65836,18:24737,19:23281


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097761.1:4930534D22Rik:antisense_RNA:2715
samples:
,0:4431,1:2254,2:1758,3:661,4:300,5:289,6:342,12:3339,14:1603,15:5366,16:2942,17:10827,18:4761,19:2989


chrom: chr3
strand: -
right_annotated: ENSMUSG00000050931.7:Sgms2:protein_coding:5801
samples:
,0:316095,1:198994,2:285440,3:124821,4:28540,5:41646,6:174295,7:11574,8:38340,9:31898,11:55212,12:88687,13:87,15:79,18:2182


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028032.13:Papss1:protein_coding:2942
samples:
,0:25752,1:14362,2:362938,3:243785,4:127763,5:209133,6:998998,7:144536,8:617294,9:422052,10:1277599,11:1921861,12:360992,13:266027,14:58462,15:87501,16:176866,17:188030,18:185192,19:150806


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028029.10:Aimp1:protein_coding:1126
samples:
,0:180464,1:107468,2:288855,3:222022,4:95498,5:138370,6:584879,7:129283,8:427211,9:261948,10:287112,11:435753,12:145820,13:65440,14:86619,15:45532,16:60199,17:96176,18:65372,19:61233


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028030.12:Tbck:protein_coding:6578
samples:
,0:17056,1:10430,2:115917,3:55556,4:41731,5:97602,6:3247209,7:270257,8:1509870,9:985594,10:319096,11:1439490,12:433585,13:38630,14:121738,15:54807,16:141489,17:109575,18:132093,19:83040


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106230.1:Gm29811:lincRNA:1671
samples:
,0:1598,1:665,2:14383,3:5748,4:2651,5:4432,6:16906,7:3060,8:31357,9:1271,15:82,16:2874,17:2953,18:964,19:30


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106499.1:Gm9403:processed_pseudogene:2181
samples:
,0:1966,1:1044,2:11045,3:3836,4:2282,5:3936,6:14678,7:3372,8:27433,9:3032,10:528,11:1387,13:78,14:4302,15:5404,16:7602,17:3537,18:4373,19:2926


chrom: chr3
strand: -
right_annotated: ENSMUSG00000040998.18:Npnt:protein_coding:4800
samples:
,0:11580,1:7896,2:53346,3:26225,4:48507,5:134521,6:316688,7:87483,8:151544,9:80961,10:344939,11:1201312,12:335002,13:44812,14:21661,15:17453,16:30373,17:9693,18:44630,19:16799


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028018.15:Gstcd:protein_coding:3660
samples:
,0:117977,1:88511,2:108091,3:76056,4:46161,5:93165,6:38617,7:15812,8:44399,9:16676,10:2912,11:2295,12:5157,13:5076,14:534,15:232,16:1283,17:261,18:2019,19:2954


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028016.9:Ints12:protein_coding:3101
samples:
,0:72823,1:51006,2:151341,3:85174,4:43966,5:73162,6:332375,7:55628,8:195614,9:96684,10:94326,11:175945,12:24699,13:19931,14:35785,15:14193,16:57240,17:22401,18:44097,19:38734


chrom: chr3
strand: -
right_annotated: ENSMUSG00000040969.14:Arhgef38:protein_coding:8190
samples:
,0:806,1:503,3:298,4:250,5:499,6:583056,7:179171,8:170689,9:141366,10:513,11:364651,14:2282,15:164,18:3274,19:547


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105957.1:Gm43254:lincRNA:2491
samples:
,0:4572,1:3090,2:12660,3:5738,4:5951,5:13455,6:83113,7:11095,8:28847,10:182811,11:1480,12:1358,15:3648,16:84,18:3872,19:3380


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028013.16:Ppa2:protein_coding:1383
samples:
,0:221953,1:136988,2:133420,3:80331,4:45695,5:73611,6:271438,7:57537,8:153034,9:165804,10:803763,11:78808,12:56666,14:135132,15:57105,16:153424,17:128671,18:57234,19:63968


chrom: chr3
strand: -
right_annotated: ENSMUSG00000040943.12:Tet2:protein_coding:9203
samples:
,0:7184,1:3591,2:132183,3:81626,4:53424,5:105680,6:2153616,7:291596,8:900537,9:538627,10:442224,11:1438287,12:459015,13:9033,14:7662,15:23520,16:47520,17:23308,18:57142,19:29119


chrom: chr3
strand: -
right_annotated: ENSMUSG00000097911.2:Gm26691:antisense_RNA:8909
samples:
,0:1193,1:558,2:20141,3:6217,4:830,5:774,6:43884,7:3735,8:8894,9:3611,12:122,14:1316,15:2185,16:3133,17:570,18:5735,19:2209


chrom: chr3
strand: +
right_annotated: ENSMUSG00000044365.15:Cxxc4:protein_coding:5694
samples:
,0:1432,1:299,2:154755,3:44368,4:7388,5:6706,6:562242,7:78892,8:142448,9:70738,11:13277,12:3583,13:1918,14:16048,15:22709,16:38940,17:13043,18:23666,19:11732


chrom: chr3
strand: +
right_annotated: ENSMUSG00000045328.11:Cenpe:protein_coding:7910
samples:
,0:381267,1:259639,2:226494,3:206038,4:20757,5:29894,6:32875,7:26945,8:129610,9:52734,10:290227,11:45466,14:342,15:3633,16:14853,17:18609,18:902,19:2725


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028167.15:Bdh2:protein_coding:1172
samples:
,0:2709,1:2264,2:31774,3:7606,4:6472,5:6784,6:964343,7:235965,8:600287,9:521046,10:568274,11:729589,12:5809,18:160


chrom: chr3
strand: +
right_annotated: ENSMUSG00000037994.14:Slc9b2:protein_coding:4818
samples:
,0:100,1:334,2:18664,3:2473,4:2534,5:2005,6:20248,7:5937,9:711,10:8138,12:303,14:100,15:2206,16:1918,18:882,19:290


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028165.9:Cisd2:protein_coding:4360
samples:
,0:33490,1:20258,2:232219,3:84752,4:52884,5:94153,6:1089280,7:243426,8:448513,9:375452,10:215260,11:759065,12:177720,13:78671,14:175899,15:82952,16:172302,17:85564,18:156637,19:95126


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105981.1:2810428J06Rik:TEC:2696
samples:
,0:1289,1:343,2:1583,3:1378,4:900,5:2802,6:34416,7:7388,8:8103,9:30753,12:35837,15:3533,18:100,19:108


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105449.1:Gm43379:TEC:7726
samples:
,0:29487,1:18425,2:16065,3:13733,4:10143,5:16697,6:69857,7:25834,8:39634,9:14468,11:44048,12:10118,13:1115,14:398,15:722,16:50,17:2729,18:9833,19:1066


chrom: chr3
strand: -
right_annotated: ENSMUSG00000097032.2:4930539J05Rik:antisense_RNA:1668
samples:
,0:84432,1:49360,2:21718,3:10552,4:8095,5:14363,6:19909,7:10279,8:8007,9:11614,10:6229,11:25572,12:1623,13:9697,14:968,15:1047,16:2168,17:3004,18:1781,19:927


chrom: chr3
strand: +
right_annotated: ENSMUSG00000078578.9:Ube2d3:protein_coding:4674
samples:
,0:449553,1:287465,2:1499001,3:724618,4:459605,5:805037,6:4547986,7:1070427,8:1362859,9:1332437,10:1184271,11:4859194,12:402365,13:273583,14:383603,15:167420,16:421803,17:484619,18:501457,19:395662


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028164.15:Manba:protein_coding:3675
samples:
,0:34537,1:25546,2:189726,3:115702,4:88767,5:136923,6:1151886,7:103458,8:323469,9:366407,10:236419,11:512010,12:41157,13:164610,14:2270,15:5373,18:5967,19:2444


chrom: chr3
strand: -
right_annotated: ENSMUSG00000083610.1:Oaz2-ps:processed_pseudogene:537
samples:
,0:70828,1:40862,2:70490,3:54533,4:49754,5:72106,6:22409,7:2682,8:13214,9:9295,10:23719,11:21997,12:34274,13:4839,14:49594,15:25116,16:50247,17:58745,18:58914,19:50681


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028163.17:Nfkb1:protein_coding:4124
samples:
,0:51321,1:29437,2:264797,3:135075,4:197189,5:280520,6:263960,7:44630,8:143095,9:49872,10:105999,11:20608,13:139046,14:20554,15:6240,16:5832,18:4155,19:1614


chrom: chr3
strand: +
right_annotated: ENSMUSG00000053897.15:Slc39a8:protein_coding:4069
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000028161.17:Ppp3ca:protein_coding:4788
samples:
,0:326104,1:216029,2:364229,3:185492,4:233076,5:476473,6:2403556,7:397522,8:893692,9:690853,10:445389,11:551882,12:94941,13:168049,14:1653140,15:941999,16:1470798,17:1362698,18:1634606,19:1217992


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105327.1:Gm9409:processed_pseudogene:316
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000054690.17:Emcn:protein_coding:2588
samples:
,0:2043,1:602,2:186364,3:72624,4:33115,5:36245,6:382,10:359485,11:176,12:1990,13:669,14:512,15:2059,18:706


chrom: chr3
strand: +
right_annotated: ENSMUSG00000046818.7:Ddit4l:protein_coding:2722
samples:
,0:46049,1:32100,2:367307,3:144390,4:95184,5:218370,6:62458,7:29188,8:109199,9:13372,11:266,12:117,13:113,15:600,16:7420,18:258,19:1647


chrom: chr3
strand: +
right_annotated: ENSMUSG00000037894.13:H2afz:protein_coding:1069
samples:
,0:221920,1:149142,2:747046,3:496743,4:100892,5:165002,6:1507947,7:375959,8:946375,9:715922,10:3283642,11:3000539,12:199336,13:155423,14:164394,15:73303,16:131698,17:111369,18:171644,19:102537


chrom: chr3
strand: +
right_annotated: ENSMUSG00000074212.7:Dnajb14:protein_coding:9477
samples:
,0:575241,1:353266,2:353479,3:204050,4:115656,5:197672,6:756552,7:129784,8:283427,9:110786,10:501729,11:765662,12:46947,13:19281,14:81262,15:79407,16:111717,17:132475,18:124920,19:90344


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105748.1:Gm43088:TEC:2347
samples:
,0:997,1:600,2:4368,3:4336,4:1542,5:2434,6:12073,7:5459,8:57535,9:491,10:11033,12:20582,13:60702,18:3561


chrom: chr3
strand: +
right_annotated: ENSMUSG00000081829.1:Gm15460:processed_pseudogene:391
samples:
,0:100,1:125,2:973,3:333,4:280,5:442,6:1624,7:569,8:891,9:1562,10:1455,11:1116,14:49,15:419,16:291,17:100,18:527,19:350


chrom: chr3
strand: -
right_annotated: ENSMUSG00000088932.1:Gm25920:snRNA:99
samples:
,0:612,1:193,2:4760,3:2708,4:1117,5:2271,6:13769,7:779,8:1509,9:1204,10:13051,11:67575,12:2183,14:1714,15:1823,16:2773,17:1929,18:2048,19:2086


chrom: chr3
strand: +
right_annotated: ENSMUSG00000091512.5:Lamtor3:protein_coding:1315
samples:
,0:19115,1:11596,2:124244,3:45101,4:46823,5:74495,6:656055,7:110390,8:327019,9:203018,10:244369,11:465230,12:68988,13:6612,14:72059,15:48720,16:116762,17:58589,18:85725,19:51548


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028159.14:Dapp1:protein_coding:3083
samples:
,0:84558,1:55043,2:88174,3:58298,4:34593,5:73916,6:19507,7:6369,11:133668,12:872,13:3650,14:316,16:919,18:1594,19:86


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028158.14:Mttp:protein_coding:4411
samples:
,0:116091,1:69250,2:55505,3:51525,4:18512,5:25742,6:131800,7:21765,8:42906,9:12726,11:209858,12:10772,13:64041,14:2446,15:2425,16:6324,17:14511,18:20148,19:7847


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104776.1:Gm43691:antisense_RNA:697
samples:
,0:11317,1:7327,2:1497,3:1630,4:706,5:934,6:1492,8:1744,11:6008,12:187,13:1450,15:162,16:124,17:643,18:489,19:236


chrom: chr3
strand: +
right_annotated: ENSMUSG00000004127.12:Trmt10a:protein_coding:4136
samples:
,0:247571,1:161616,2:63693,3:42127,4:27137,5:55101,6:256408,7:36278,8:83893,9:30054,10:21892,11:271949,12:26792,13:42539,14:23522,15:1174,16:16392,17:81,18:8136,19:6985


chrom: chr3
strand: +
right_annotated: ENSMUSG00000090306.5:Adh6-ps1:transcribed_unprocessed_pseudogene:2982
samples:
,0:177,1:137,2:2534,3:16725,4:1075,5:1175,6:8277,7:1964,8:5813,9:6024,10:9063,11:9256,12:863,13:1035,15:5,17:30,18:50


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028138.8:Adh5:protein_coding:1604
samples:
,0:89153,1:46224,2:879419,3:627763,4:397085,5:650145,6:1479269,7:216036,8:820553,9:753283,10:1505048,11:1858210,12:272452,13:201744,14:94250,15:66858,16:148414,17:135957,18:124919,19:112488


chrom: chr3
strand: -
right_annotated: ENSMUSG00000005813.12:Metap1:protein_coding:6027
samples:
,0:144275,1:87200,2:279702,3:152626,4:128075,5:229240,6:547076,7:129256,8:428526,9:216404,10:447992,11:678876,12:129852,13:58021,14:56759,15:49080,16:125760,17:116580,18:91801,19:64976


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028156.12:Eif4e:protein_coding:5127
samples:
,0:314663,1:199636,2:437208,3:233609,4:150741,5:276156,6:3172957,7:696378,8:1990116,9:1476195,10:1841123,11:2217518,12:821799,13:584521,14:203741,15:131525,16:247249,17:151897,18:249996,19:162036


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028152.10:Tspan5:protein_coding:6979
samples:
,0:77035,1:56887,2:203363,3:110426,4:152568,5:318069,6:182674,7:40445,8:100642,9:75326,11:164,12:15566,14:211173,15:163659,16:268333,17:305998,18:190470,19:198555


chrom: chr3
strand: -
right_annotated: ENSMUSG00000086123.3:Gm16060:processed_pseudogene:478
samples:
,0:382,1:462,2:5893,3:3405,4:1009,5:985,6:11287,7:2296,8:17367,9:2766,10:7492,11:4533,12:874,13:915,14:1030,15:556,16:2411,17:643,18:1906,19:1254


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028149.12:Rap1gds1:protein_coding:4633
samples:
,0:22530,1:14921,2:287541,3:146752,4:131284,5:233376,6:232761,7:68030,8:151451,9:173219,11:142129,12:204190,13:2147,14:1015221,15:696747,16:1294894,17:1086815,18:936096,19:911135


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106574.1:Gm2451:processed_pseudogene:999
samples:
,0:8195,1:3891,2:136716,3:117942,4:42554,5:78513,6:357367,7:56425,8:177246,9:134653,10:194931,11:161648,12:45757,13:34695,14:63495,15:53311,16:107561,17:74288,18:88787,19:79291


chrom: chr3
strand: +
right_annotated: ENSMUSG00000059921.15:Unc5c:protein_coding:9703
samples:
,0:1997,1:1527,2:27576,3:15834,4:6480,5:8913,6:160632,7:19563,8:54965,9:17678,10:401,11:39393,12:142,13:78,14:4897,15:148,16:52,17:6599,18:8994,19:2697


chrom: chr3
strand: -
right_annotated: ENSMUSG00000052430.15:Bmpr1b:protein_coding:5822
samples:
,0:2095,1:744,2:829305,3:381115,4:61978,5:59359,6:587831,7:94260,8:141196,9:92411,11:52986,12:1034,13:21447,15:6696,16:535,17:21463,18:1043,19:4630


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105015.1:Gm6059:processed_pseudogene:340
samples:
,0:300,1:150,2:500,3:139,4:242,5:430,6:708,7:483,8:764,9:696,10:234,11:579,12:88,14:682,15:211,16:1167,17:587,18:1017,19:496


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028273.15:Pdlim5:protein_coding:6904
samples:
,0:35412,1:22497,2:268210,3:116474,4:120296,5:204295,6:926396,7:173190,8:144070,9:276221,10:3130,11:352226,14:175,15:1445,17:59,18:6937,19:3213


chrom: chr3
strand: +
right_annotated: ENSMUSG00000040253.15:Gbp7:protein_coding:5614
samples:
,0:6857,1:2198,2:196564,3:100855,4:65460,5:88653,6:387321,7:49281,8:157387,9:155216,11:191398,12:21043,15:150,16:6164,17:14414,18:3185,19:1699


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105338.1:Gm43802:processed_pseudogene:637
samples:
,0:617,1:300,2:26842,3:11998,4:10363,5:11588,6:43819,7:5881,8:11979,9:17485,11:35151,15:46,16:172,18:32


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028268.14:Gbp3:protein_coding:3054
samples:
,0:3913,1:1979,2:116350,3:66296,4:32686,5:61553,6:2843,7:15440,8:55576,9:34175,10:66296,14:559,15:312,16:50,17:568,18:1359,19:408


chrom: chr3
strand: +
right_annotated: ENSMUSG00000040213.13:Kyat3:protein_coding:4235
samples:
,0:24744,1:10971,2:89482,3:66801,4:30453,5:71900,6:136105,7:24627,8:126736,9:120511,10:140543,11:225554,12:92028,13:51463,14:19584,15:131,16:282,17:73,18:11764,19:5271


chrom: chr3
strand: -
right_annotated: ENSMUSG00000086561.1:Gm15540:antisense_RNA:674
samples:
,0:1808,1:874,2:7044,3:4662,4:1801,5:6602,6:10442,7:1425,8:7366,9:9268,10:12712,11:17443,12:1605,13:2903,14:639,18:612,19:335


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028271.9:Gtf2b:protein_coding:1455
samples:
,0:231130,1:141185,2:298362,3:150549,4:121205,5:212751,6:1029783,7:173555,8:519552,9:307876,10:592067,11:527556,12:54343,13:16002,14:48515,15:35184,16:95515,17:68470,18:88254,19:70643


chrom: chr3
strand: -
right_annotated: ENSMUSG00000004591.16:Pkn2:protein_coding:6207
samples:
,0:265099,1:159820,2:650209,3:329493,4:370731,5:739066,6:964572,7:213338,8:176927,9:173289,10:130300,11:369338,12:65195,13:19123,14:30869,15:7878,16:17115,17:29551,18:18024,19:18206


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106550.1:Gm43646:processed_transcript:464
samples:
,0:1783,1:894,2:947,3:506,4:704,5:1470,6:152,7:1006,8:114,9:71,11:150,14:10,15:20,16:39,17:10,18:20,19:30


chrom: chr3
strand: +
right_annotated: ENSMUSG00000078162.6:Gm2574:processed_pseudogene:1002
samples:
,0:8412,1:5176,2:150531,3:129878,4:54477,5:87716,6:362328,7:59879,8:162187,9:122821,10:165702,11:141995,12:38246,13:30782,14:64360,15:52572,16:105762,17:74214,18:91148,19:85894


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028266.17:Lmo4:protein_coding:2014
samples:
,0:20777,1:11294,2:336112,3:124333,4:139778,5:256889,6:850361,7:93834,8:160796,9:117684,10:164663,11:151500,12:99571,13:15527,14:466344,15:165341,16:391491,17:493099,18:375355,19:240644


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104969.1:Gm43445:sense_intronic:2091
samples:
,0:299,1:100,2:3512,3:1314,4:3033,5:3501,6:72864,7:13337,9:28192,11:54790,13:34,15:1777,16:3615,19:1450


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106416.1:Gm5857:processed_pseudogene:493
samples:
,0:1873,1:676,2:15830,3:9315,4:3965,5:3989,6:8541,7:4037,8:3317,9:4156,10:2684,11:1031,12:203,13:144,14:887,15:400,16:3957,17:848,18:2557,19:2611


chrom: chr3
strand: -
right_annotated: ENSMUSG00000040151.9:Hs2st1:protein_coding:6177
samples:
,0:40118,1:23905,2:292981,3:202013,4:88574,5:117320,6:547544,7:175851,8:342681,9:234256,10:41624,11:117129,12:23686,13:42684,14:41818,15:12987,16:57002,17:19802,18:37511,19:36021


chrom: chr3
strand: +
right_annotated: ENSMUSG00000037072.15:Selenof:protein_coding:1514
samples:
,0:311169,1:207477,2:1358074,3:930670,4:521100,5:748542,6:4813389,7:812166,8:1987269,9:1587872,10:3164748,11:2213643,12:419368,13:444691,14:603837,15:305545,16:544086,17:567013,18:756807,19:452210


chrom: chr3
strand: -
right_annotated: ENSMUSG00000037062.13:Sh3glb1:protein_coding:7467
samples:
,0:2570290,1:1693445,2:669863,3:280447,4:242097,5:427487,6:718863,7:196436,8:314014,9:263123,10:437857,11:462850,12:166666,13:52744,14:36520,15:33230,16:56059,17:40133,18:47209,19:30258


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106089.1:Gm9419:processed_pseudogene:567
samples:
,0:592,1:384,2:9222,3:7542,4:1709,5:2415,6:4932,7:1814,8:3786,9:3048,10:5211,11:5511,12:806,13:90,14:6236,15:3966,16:6169,17:7199,18:9351,19:5220


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028256.16:Odf2l:protein_coding:2584
samples:
,0:113068,1:68198,2:91512,3:46611,4:26033,5:52694,6:201452,7:67533,8:105397,9:68200,10:136823,11:89035,12:12779,13:30353,14:145,15:10279,16:11791,17:4361,18:4946,19:8543


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028197.4:Col24a1:protein_coding:7143
samples:
,0:4120,1:2515,2:5888,3:8768,4:8864,5:32713,6:254,7:238,8:3725,11:3,14:273,15:195,16:3309,18:5662,19:1756


chrom: chr3
strand: +
right_annotated: ENSMUSG00000074182.8:Znhit6:protein_coding:2366
samples:
,0:56462,1:31307,2:93542,3:58662,4:36155,5:62271,6:186167,7:34526,8:153882,9:69859,10:59279,11:205489,13:1023,14:1339,15:8920,16:3790,17:6549,18:9533,19:5824


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028195.4:Cyr61:protein_coding:2019
samples:
,0:4958,1:3068,2:140774,3:46642,4:97627,5:113081,6:2983943,7:303499,8:2095627,9:1414360,10:4042614,11:4140904,12:3337132,13:1064756,14:278685,15:109184,16:35272,17:17229,18:8378,19:37048


chrom: chr3
strand: +
right_annotated: ENSMUSG00000097183.2:Gm17501:lincRNA:1700
samples:
,0:974,1:181,2:3713,3:1684,4:2883,5:1476,6:13872,7:1171,9:926,11:5707,14:5984,15:3541,16:3340,17:1731,18:3356,19:575


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028194.15:Ddah1:protein_coding:3792
samples:
,0:47797,1:34724,2:150080,3:62326,4:222542,5:604920,6:3636937,7:586085,8:2345561,9:1555889,10:610260,11:412533,12:224021,13:222317,14:558536,15:180485,16:392553,17:422158,18:219208,19:177784


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105388.1:Rpl36a-ps2:processed_pseudogene:321
samples:
,0:30241,1:16661,2:1212419,3:1009452,4:293744,5:300669,6:1425433,7:481740,8:891420,9:807759,10:2016167,11:789016,12:184797,13:159665,14:12453,15:14051,16:22149,17:9787,18:14452,19:12640


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028191.11:Bcl10:protein_coding:1949
samples:
,0:22093,1:12268,2:140640,3:80479,4:69514,5:120987,6:526553,7:70122,8:280575,9:145487,10:873073,11:583835,12:41751,13:59588,14:22896,15:17762,16:26343,17:36187,18:48435,19:21951


chrom: chr3
strand: +
right_annotated: ENSMUSG00000036873.13:2410004B18Rik:protein_coding:1547
samples:
,0:44931,1:27264,2:83264,3:46466,4:52434,5:114694,6:195084,7:33387,8:45212,9:71341,10:80902,12:46277,13:15504,14:108044,15:41790,16:93409,17:55338,18:44964,19:38456


chrom: chr3
strand: +
right_annotated: ENSMUSG00000036863.12:Syde2:protein_coding:5498
samples:
,0:6624,1:4879,2:36531,3:15484,4:9778,5:10964,6:214819,7:43978,8:114293,9:120430,10:23907,11:59406,13:18495,15:3529,16:6406,18:898,19:2900


chrom: chr3
strand: -
right_annotated: ENSMUSG00000043020.13:Wdr63:protein_coding:3176
samples:
,0:355847,1:250269,2:635,3:561,4:3689,5:1002,6:519746,7:49905,8:131313,9:122260,11:4106,12:8350,13:1424,15:50,16:49,19:15


chrom: chr3
strand: +
right_annotated: ENSMUSG00000036853.5:Mcoln3:protein_coding:2991
samples:
,0:292,1:189,2:599,3:100,6:1401714,7:119421,8:525209,9:363719,10:71518,11:1219870,12:299478,13:209893,15:722,18:215


chrom: chr3
strand: +
right_annotated: ENSMUSG00000036832.5:Lpar3:protein_coding:2464
samples:
,0:80788,1:45630,2:597,3:150,4:298418,5:658359,6:327111,7:39200,8:133585,9:55739,11:258,12:51241,13:84417


chrom: chr3
strand: +
right_annotated: ENSMUSG00000036825.12:Ssx2ip:protein_coding:3701
samples:
,0:1047620,1:705118,2:103801,3:56405,4:192395,5:432464,6:1491923,7:264303,8:396377,9:442450,10:29786,11:427216,12:143334,13:97816,14:186626,15:79085,16:182476,17:115961,18:161749,19:97960


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028189.12:Ctbs:protein_coding:2892
samples:
,0:89887,1:52414,2:88615,3:61005,4:62763,5:115400,6:147920,7:63180,8:213021,9:143984,10:214957,11:412205,12:46125,13:180,15:6677,16:4000,17:12165,18:5019,19:4328


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028188.13:Spata1:protein_coding:3964
samples:
,0:894253,1:570797,2:45428,3:18591,4:14049,5:29963,6:183526,7:40091,8:44636,9:43291,10:35282,11:177300,12:6789,14:7757,15:1361,16:416,17:2753,18:3221,19:800


chrom: chr3
strand: +
right_annotated: ENSMUSG00000068523.12:Gng5:protein_coding:2765
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000028187.10:Rpf1:protein_coding:3008
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000048652.12:Samd13:protein_coding:2268
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000105529.1:Gm9480:processed_pseudogene:616
samples:
,0:250,1:85,2:3027,3:1896,4:731,5:670,6:14188,7:1533,8:2841,9:2071,10:3335,11:4844,12:324,13:249,14:1499,15:500,16:1277,17:797,18:1315,19:1050


chrom: chr3
strand: -
right_annotated: ENSMUSG00000005034.15:Prkacb:protein_coding:5211
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000070343.3:Gm10288:processed_pseudogene:537
samples:
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chrom: chr3
strand: +
right_annotated: ENSMUSG00000036745.15:Ttll7:protein_coding:7409
samples:
,0:371972,1:232577,2:55128,3:22563,4:6816,5:6891,6:718010,7:143487,8:206540,9:106405,10:8645,11:206087,12:702,14:318784,15:168919,16:229432,17:215549,18:191924,19:165376


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028184.12:Adgrl2:protein_coding:6438
samples:
,0:66853,1:49593,2:204116,3:131833,4:188318,5:368190,6:1258184,7:272494,8:387027,9:367565,10:210079,11:357553,12:43509,13:50842,14:112047,15:65043,16:233017,17:95612,18:168951,19:139774


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104786.1:Gm43573:antisense_RNA:570
samples:
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chrom: chr3
strand: -
right_annotated: ENSMUSG00000106515.4:Gm30382:lincRNA:3396
samples:
,0:100,2:398,3:130,5:116,6:255303,7:68429,8:122585,9:61054,11:13697,14:729,15:417,16:2687,17:387,18:622,19:2156


chrom: chr3
strand: -
right_annotated: ENSMUSG00000047676.6:Rpsa-ps10:processed_pseudogene:885
samples:
,0:185260,1:116770,2:2161279,3:1685563,4:582364,5:598121,6:3636164,7:764621,8:1893989,9:1458265,10:7133525,11:3505568,12:688191,13:477363,14:32781,15:36752,16:67005,17:35172,18:46896,19:44221


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105779.1:Gm6439:processed_pseudogene:862
samples:
,0:15227,1:8543,2:25194,3:16314,4:6915,5:12562,6:65440,7:12698,8:45126,9:30589,10:31538,11:54113,12:14273,13:7596,14:4877,15:1752,16:3216,17:2362,18:7365,19:2934


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028035.13:Dnajb4:protein_coding:2914
samples:
,0:563439,1:361239,2:252855,3:114836,4:93478,5:136997,6:1543616,7:306893,8:587206,9:515085,10:719899,11:1086402,12:86782,13:52825,14:101618,15:51777,16:193105,17:118462,18:195031,19:154107


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028034.15:Fubp1:protein_coding:8167
samples:
,0:228970,1:148981,2:1293618,3:567964,4:341578,5:632703,6:3425982,7:646722,8:1297432,9:1094568,10:664698,11:2207541,12:373011,13:215802,14:84084,15:102439,16:155484,17:120357,18:47695,19:40408


chrom: chr3
strand: -
right_annotated: ENSMUSG00000039103.12:Nexn:protein_coding:2896
samples:
,0:25206,1:15700,2:167984,3:63224,4:31542,5:37130,6:21329,7:8080,8:8908,9:9837,10:67551,11:31871,13:1538,14:146,15:2633,16:1207,17:4157,18:502,19:776


chrom: chr3
strand: -
right_annotated: ENSMUSG00000054942.13:Miga1:protein_coding:9256
samples:
,0:25569,1:14574,2:168094,3:85404,4:63538,5:113933,6:696909,7:101215,8:187786,9:251048,10:180,11:749962,12:22769,13:7343,14:74168,15:85972,16:155070,17:133584,18:156001,19:157781


chrom: chr3
strand: +
right_annotated: ENSMUSG00000025437.15:Usp33:protein_coding:4194
samples:
,0:72295,1:35349,2:836037,3:344030,4:182101,5:281554,6:808989,7:128394,8:296228,9:127072,10:94469,11:725510,12:74562,13:19694,14:399159,15:281366,16:509835,17:428110,18:446521,19:294049


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104822.1:Gm42967:TEC:2312
samples:
,0:6758,1:3069,2:64425,3:26482,4:15802,5:24638,6:64728,7:10590,8:24802,9:7697,11:73094,12:6264,14:37453,15:22099,16:38762,17:35613,18:35871,19:26113


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105710.1:Gm43859:TEC:1412
samples:
,0:3630,1:1548,2:34627,3:14555,4:7729,5:13889,6:20605,7:2411,8:26671,9:3162,10:41,11:130927,12:1721,13:1483,14:14070,15:7612,16:14990,17:12096,18:13967,19:9149


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104546.1:Gm43858:TEC:1778
samples:
,0:1067,1:479,2:15898,3:9422,4:4628,5:7832,6:6202,7:3746,8:180,9:185,12:11881,15:1294,16:361,17:10472,18:802,19:200


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104548.1:Gm43857:TEC:3079
samples:
,0:29641,1:14448,2:311991,3:123822,4:65210,5:102085,6:596719,7:115085,8:188401,9:75873,10:13513,11:301775,12:19054,13:30547,14:133586,15:67922,16:156283,17:89651,18:141564,19:72123


chrom: chr3
strand: +
right_annotated: ENSMUSG00000039068.16:Zzz3:protein_coding:7796
samples:
,0:133643,1:88215,2:456490,3:232105,4:183749,5:350919,6:945008,7:180128,8:317603,9:309323,10:229821,11:885674,12:81975,13:229890,14:26381,15:22950,16:44541,17:67292,18:64509,19:48283


chrom: chr3
strand: -
right_annotated: ENSMUSG00000039058.11:Ak5:protein_coding:3323
samples:
,0:8298,1:3450,2:2165,3:1265,4:7391,5:15433,6:12571,7:2598,8:4697,9:71,11:105,13:21289,14:309819,15:204772,16:318713,17:402994,18:334187,19:339853


chrom: chr3
strand: +
right_annotated: ENSMUSG00000039047.17:Pigk:protein_coding:4878
samples:
,0:141114,1:84390,2:335037,3:201224,4:153753,5:302041,6:470108,7:85676,8:360128,9:268621,10:163865,11:652067,12:141164,13:130160,14:160120,15:66427,16:126841,17:111820,18:143114,19:90727


chrom: chr3
strand: -
right_annotated: ENSMUSG00000039037.5:St6galnac5:protein_coding:5667
samples:
,0:1487,1:964,2:1603,3:1793,4:1836,5:1424,6:54758,7:17482,8:2130,9:17953,10:210799,11:14,14:42803,15:33482,16:67197,17:66630,18:48236,19:22107


chrom: chr3
strand: -
right_annotated: ENSMUSG00000052544.9:St6galnac3:protein_coding:8169
samples:
,0:32998,1:19526,2:33864,3:15752,4:6429,5:8063,6:188578,7:43281,8:110138,9:90678,10:37008,11:556448,12:452,13:42182,15:857,16:13361,17:2595,18:3153,19:2833


chrom: chr3
strand: -
right_annotated: ENSMUSG00000038975.14:Rabggtb:protein_coding:1494
samples:
,0:28276,1:14824,2:382868,3:218243,4:84258,5:125616,6:621763,7:127205,8:364435,9:387352,10:539926,11:454633,12:68424,13:34555,14:179439,15:100020,16:101017,17:124503,18:143825,19:68080


chrom: chr3
strand: -
right_annotated: ENSMUSG00000062908.12:Acadm:protein_coding:2047
samples:
,0:51981,1:26637,2:641075,3:306244,4:194482,5:286143,6:450908,7:96670,8:504210,9:396686,10:808903,11:446181,12:132775,13:82436,14:50927,15:19416,16:74827,17:51296,18:16560,19:20621


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028360.9:Slc44a5:protein_coding:4098
samples:
,0:32948,1:22702,2:1452,3:600,4:4376,5:6015,6:3471,7:7662,8:15221,9:18439,10:1240,11:54384,14:709,15:926,16:2644,17:396,18:9513,19:5979


chrom: chr3
strand: +
right_annotated: ENSMUSG00000090114.1:Gm3076:processed_pseudogene:451
samples:
,0:11966,1:7047,2:12315,3:7739,4:3302,5:7105,6:11000,7:2427,8:8428,9:6767,10:12548,11:14177,12:2361,13:1133,14:2986,15:1111,16:2998,17:3049,18:5441,19:3377


chrom: chr3
strand: -
right_annotated: ENSMUSG00000047583.9:Tyw3:protein_coding:4493
samples:
,0:8959,1:5887,2:36937,3:23432,4:15796,5:29185,6:46674,7:20480,8:87583,9:21049,10:263205,11:8056,12:3150,14:7068,15:22706,16:29996,17:40267,18:44566,19:22779


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028199.18:Cryz:protein_coding:2507
samples:
,0:22649,1:14986,2:92469,3:74320,4:131212,5:218570,6:502873,7:44519,8:257985,9:145660,10:237383,11:570237,12:80778,13:125980,14:36120,15:9808,16:36656,17:44286,18:17057,19:23750


chrom: chr3
strand: +
right_annotated: ENSMUSG00000078161.8:Erich3:protein_coding:8789
samples:
,0:1246877,1:744993,2:5071,3:1890,4:5883,5:6578,6:579367,7:57008,8:169450,9:88557,10:796,11:72788,12:65477,13:73506,14:24681,15:12888,16:34461,17:25128,18:24970,19:30737


chrom: chr3
strand: -
right_annotated: ENSMUSG00000053870.7:Fpgt:protein_coding:3518
samples:
,0:37291,1:21556,2:193492,3:63168,4:57516,5:84591,6:296566,7:44773,8:89523,9:95443,11:1013979,13:11541,14:34164,15:22538,16:50627,17:32492,18:25986,19:25836


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028182.14:Lrriq3:protein_coding:3623
samples:
,0:534535,1:353546,2:9772,3:8161,4:6598,5:12985,6:71672,7:5739,8:45779,9:30535,10:130301,12:8043,15:180,16:191,17:1836,18:6004,19:109


chrom: chr3
strand: +
right_annotated: ENSMUSG00000103295.1:Scp2-ps1:unprocessed_pseudogene:499
samples:
,0:227,1:50,2:1369,3:735,4:434,5:351,6:461,8:424,9:294,10:1175,11:964,12:472,13:171,14:39,15:50,16:159,17:50,18:150,19:43


chrom: chr3
strand: -
right_annotated: ENSMUSG00000085084.7:4930570G19Rik:lincRNA:3695
samples:
,0:25170,1:17755,2:100,3:506,4:546,5:1385,6:7969,7:12990,9:15848,10:78915,13:17804,14:4725,15:6055,16:1793,17:11554,18:14639,19:8920


chrom: chr3
strand: +
right_annotated: ENSMUSG00000040037.13:Negr1:protein_coding:6725
samples:
,0:1650,1:1542,2:978,3:993,4:9838,5:32591,6:406570,7:56324,8:83176,9:65279,10:167840,11:36824,12:39385,13:26796,14:342243,15:239232,16:300975,17:321126,18:447903,19:257183


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104696.1:Gm42946:TEC:2570
samples:
,5:34,6:358271,7:35287,8:106412,9:17454,10:2664,11:645869,12:156,13:289,14:7107,15:1759,16:3928,17:1600,18:7525,19:2399


chrom: chr3
strand: +
right_annotated: ENSMUSG00000106047.1:Gm42942:TEC:1328
samples:
,1:100,6:165093,7:27354,8:72876,9:30290,10:110801,11:9490,12:83,13:63,14:13,15:1200,16:2317,17:13,18:1990,19:368


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104555.1:Gm5983:processed_pseudogene:770
samples:
,0:565,1:100,2:1347,3:726,4:346,5:626,6:15332,7:3484,8:12165,9:7044,10:7273,11:15241,12:1023,13:1434,14:6130,15:3337,16:6320,17:6424,18:7232,19:5032


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028180.18:Zranb2:protein_coding:3003
samples:
,0:283897,1:179049,2:728819,3:344733,4:228884,5:396759,6:2380211,7:372229,8:1186522,9:697164,10:630319,11:1505212,12:157073,13:148518,14:279462,15:197291,16:356071,17:263178,18:267442,19:125370


chrom: chr3
strand: +
right_annotated: ENSMUSG00000040016.16:Ptger3:protein_coding:3237
samples:
,1:99,2:14317,3:4504,4:3638,5:1947,6:270,7:1220,8:8075,14:70603,15:18399,16:53858,17:90925,18:6609,19:20356


chrom: chr3
strand: -
right_annotated: ENSMUSG00000106419.1:Gm5550:processed_pseudogene:1076
samples:
,0:2780,1:3025,2:10156,3:5236,4:2154,5:3791,6:3191,7:1410,8:2364,9:2482,10:3020,11:5764,12:35,13:40,14:200,15:50,16:450,17:4231,18:197,19:150


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104862.1:Gm6520:processed_pseudogene:410
samples:
,0:22436,1:15516,2:99604,3:69987,4:23313,5:26722,6:4827,7:1831,8:3596,9:3085,10:8122,11:1328,12:490,13:610,14:1693,15:1150,16:2179,17:1731,18:2076,19:1429


chrom: chr3
strand: +
right_annotated: ENSMUSG00000039988.14:Ankrd13c:protein_coding:3903
samples:
,0:129156,1:84730,2:273875,3:137601,4:107047,5:196529,6:1317332,7:367998,8:713655,9:554670,10:64832,11:630702,12:177469,13:73949,14:100515,15:31907,16:93736,17:72110,18:72660,19:56069


chrom: chr3
strand: +
right_annotated: ENSMUSG00000105643.1:Gm42611:TEC:3407
samples:
,0:339,1:300,2:549,3:500,4:1180,5:1651,6:123519,7:47679,8:131734,9:144931,10:450,11:186858,15:873,18:459


chrom: chr3
strand: -
right_annotated: ENSMUSG00000055436.18:Srsf11:protein_coding:3224
samples:
,0:346548,1:211835,2:809263,3:462844,4:272084,5:460332,6:2496326,7:494023,8:841508,9:652263,10:1148419,11:2058486,12:156922,13:160301,14:139000,15:118111,16:164924,17:198085,18:165737,19:108398


chrom: chr3
strand: -
right_annotated: ENSMUSG00000105201.1:Gm43362:TEC:2470
samples:
,0:2476,1:914,2:2130,3:1497,4:1240,5:1374,6:98333,7:27178,8:39922,9:64296,10:8654,11:63070,12:4012,13:360,14:1838,15:1107,16:850,18:1547,19:1808


chrom: chr3
strand: +
right_annotated: ENSMUSG00000063052.9:Lrrc40:protein_coding:4142
samples:
,0:65758,1:43089,2:257412,3:183680,4:68630,5:102253,6:453540,7:83879,8:224671,9:206260,10:469085,11:697931,12:18217,13:5167,14:97365,15:43040,16:97816,17:58942,18:136484,19:100044


chrom: chr3
strand: -
right_annotated: ENSMUSG00000104597.1:B230334C09Rik:antisense_RNA:8927
samples:
,0:3668,1:1685,2:13465,3:11760,4:5477,5:11723,6:56471,7:35902,8:12708,9:76,12:208,13:1230,14:104474,15:68502,16:63020,17:129498,18:101024,19:71622


chrom: chr3
strand: -
right_annotated: ENSMUSG00000028176.11:Lrrc7:protein_coding:7462
samples:
,0:1222,1:729,2:4258,3:4341,4:800,5:2626,6:38885,7:19292,8:23612,9:4383,14:112265,15:88901,16:132252,17:75762,18:100657,19:56369


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104647.1:Gm43485:TEC:1710
samples:
,0:100,2:37,3:122,4:37,5:34,6:73116,7:10364,8:6163,9:9,11:73,14:2366,15:165,16:1565,17:3424,18:451,19:1322


chrom: chr3
strand: +
right_annotated: ENSMUSG00000104864.1:Gm43655:processed_pseudogene:222
samples:
,0:10965,1:5920,2:26786,3:17823,4:6493,5:9378,6:451,7:259,8:729,9:946,10:839,11:2069,14:6946,15:4789,16:8021,17:8288,18:6042,19:5789


chrom: chr3
strand: +
right_annotated: ENSMUSG00000028173.10:Wls:protein_coding:3769
samples:
,0:10403,1:7084,2:556979,3:399062,4:276163,5:278647,6:2357471,7:513052,8:1637805,9:1044361,10:1392568,11:3976932,12:638741,13:580696,15:12394,16:18480,17:1578,18:7700


chrom: chr4
strand: -
right_annotated: ENSMUSG00000028232.13:Tmem68:protein_coding:2690
samples:
,0:16891,1:10470,2:168532,3:44102,4:28750,5:57301,6:246081,7:73621,8:277388,9:54812,10:7584,11:681034,12:88727,13:20403,14:123135,15:88210,16:166057,17:110510,18:71645,19:48640


chrom: chr4
strand: +
right_annotated: ENSMUSG00000028233.6:Tgs1:protein_coding:4327
samples:
,0:20639,1:13138,2:220221,3:111677,4:67246,5:106028,6:579596,7:129106,8:308489,9:121744,10:387326,11:947373,12:12728,13:55432,14:42419,15:61947,16:83433,17:26284,18:94274,19:65831


chrom: chr4
strand: +
right_annotated: ENSMUSG00000042228.14:Lyn:protein_coding:3463
samples:
,0:3382,1:1500,2:88806,3:41237,4:26752,5:28647,6:107923,7:5702,8:9331,9:20366,10:684,12:37013,14:406,18:764


chrom: chr4
strand: -
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028243.5:Ubxn2b:protein_coding:6642
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028249.15:Sdcbp:protein_coding:3905
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028245.15:Nsmaf:protein_coding:3507
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000081913.1:Gm11803:processed_pseudogene:444
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000081388.1:Gm11801:processed_pseudogene:746
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000041272.11:Tox:protein_coding:3961
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000086052.1:Gm11802:antisense_RNA:653
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000082151.3:Gm11810:processed_pseudogene:333
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000047187.9:Rab2a:protein_coding:2133
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000041235.12:Chd7:protein_coding:10363
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000041216.15:Clvs1:protein_coding:3681
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028207.18:Asph:protein_coding:12101
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000085558.7:4930412C18Rik:processed_transcript:3839
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000066315.9:Gm12918:processed_pseudogene:636
samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000050323.14:Ndufaf6:protein_coding:1082
samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000105333.1:Mir684-2:miRNA:86
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000081490.1:Gm11830:processed_pseudogene:561
samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000040728.15:Esrp1:protein_coding:3969
samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028218.19:Fam92a:protein_coding:1645
samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000104211.1:Gm37985:TEC:74456
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000055963.12:Triqk:protein_coding:3568
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000006586.15:Runx1t1:protein_coding:6765
samples:
,0:45472,1:29365,2:20213,3:10874,4:16223,5:38425,6:1675160,7:219841,8:911279,9:528020,10:416343,11:1057934,12:98414,13:194572,14:130230,15:100467,16:135137,17:179218,18:132768,19:109080


chrom: chr4
strand: +
right_annotated: ENSMUSG00000082128.1:Gm11824:processed_pseudogene:846
samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000083280.1:Gm11838:processed_pseudogene:231
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000086587.7:Gm11837:antisense_RNA:876
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000043252.8:Tmem64:protein_coding:4670
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028222.2:Calb1:protein_coding:4222
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028223.8:Decr1:protein_coding:2959
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028224.14:Nbn:protein_coding:2533
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000041153.9:Osgin2:protein_coding:2658
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000084408.1:Gm11870:processed_pseudogene:1322
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000041135.15:Ripk2:protein_coding:2692
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000083725.1:Gm11865:processed_pseudogene:859
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028226.15:Mmp16:protein_coding:5011
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000050550.7:Gm11868:processed_pseudogene:1478
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000082320.1:Gm11877:processed_pseudogene:852
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028228.5:Cpne3:protein_coding:5648
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028229.11:Rmdn1:protein_coding:1963
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000078772.2:Gm12353:protein_coding:554
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000041058.15:Wwp1:protein_coding:6453
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000073987.4:Ggh:protein_coding:1965
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000081964.1:Gm11873:processed_pseudogene:1304
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000083654.1:Gm11875:processed_pseudogene:799
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028252.20:Ccnc:protein_coding:4368
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000040455.17:Usp45:protein_coding:6005
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028248.15:Pnisr:protein_coding:6560
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028247.2:Coq3:protein_coding:2651
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028246.13:Faxc:protein_coding:2627
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000040410.14:Fbxl4:protein_coding:2546
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000103000.1:Gm37900:TEC:3805
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
,0:434050,1:299455,2:631636,3:276930,4:180119,5:344218,6:364044,7:54327,8:58037,9:166014,10:20560,11:83325,12:9489,13:33595,14:23607,15:28715,16:49282,17:29199,18:20055,19:12852


chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028274.17:Rngtt:protein_coding:4157
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000044288.6:Cnr1:protein_coding:6300
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000062554.7:Gm12751:processed_pseudogene:381
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000095588.1:Gm12350:processed_pseudogene:462
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028291.7:Akirin2:protein_coding:1397
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000040044.11:Orc3:protein_coding:2300
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028292.14:Rars2:protein_coding:1868
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028293.14:Slc35a1:protein_coding:2039
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028294.15:Cfap206:protein_coding:2316
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028295.14:Smim8:protein_coding:1021
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000039967.14:Zfp292:protein_coding:9986
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000082709.1:Gm12362:processed_pseudogene:342
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000045083.14:Lingo2:protein_coding:4423
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000084148.1:Gm12380:processed_pseudogene:544
samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028407.4:Toporsos:protein_coding:1044
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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right_annotated: ENSMUSG00000087623.1:Gm12404:processed_transcript:1661
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000061322.15:Dnaic1:protein_coding:2538
samples:
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chrom: chr4
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right_annotated: ENSMUSG00000028445.7:Enho:protein_coding:1269
samples:
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chrom: chr4
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right_annotated: ENSMUSG00000028444.17:Cntfr:protein_coding:2058
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000073889.10:Il11ra1:protein_coding:2510
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028447.11:Dctn3:protein_coding:973
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000036078.16:Sigmar1:protein_coding:1640
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000036073.17:Galt:protein_coding:1859
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000073888.12:Ccl27a:protein_coding:1777
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000082962.3:Gm10601:unprocessed_pseudogene:1422
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000085730.7:Gm13307:antisense_RNA:832
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000084010.1:Gm13302:unprocessed_pseudogene:1849
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000094065.1:Gm21541:protein_coding:870
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000078747.9:Gm20878:protein_coding:930
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000078746.2:Fam205a4:protein_coding:4130
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000082414.1:Gm13303:unprocessed_pseudogene:1284
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000096256.1:Gm21093:protein_coding:1710
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000103694.1:Gm37530:TEC:4932
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000095348.1:Gm3892:antisense_RNA:3539
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000094293.1:Gm3893:protein_coding:909
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000073878.3:Gm13304:protein_coding:837
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000087577.1:Gm13299:antisense_RNA:425
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000073877.10:Gm13306:protein_coding:653
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000073876.3:Gm13305:protein_coding:1953
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000091542.1:Gm17167:processed_transcript:5054
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000096862.1:Gm13301:transcribed_unprocessed_pseudogene:2446
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000073879.4:Gm5859:unprocessed_pseudogene:2324
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000090338.1:Gm17081:unprocessed_pseudogene:478
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000083929.3:Gm10600:protein_coding:2047
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000095675.1:Ccl21b:protein_coding:402
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000094695.1:Gm21953:protein_coding:264
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000093996.1:Fam205a3:protein_coding:3927
samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000093909.2:Gm3883:unprocessed_pseudogene:3229
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000095779.1:Gm2163:protein_coding:2723
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000096596.1:Gm10591:protein_coding:402
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000096826.1:Ccl27b:protein_coding:425
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000102504.1:Gm21955:TEC:4968
samples:
,0:40917,1:26087,2:6825,3:1511,4:5117,5:3616,6:1967,7:1604,8:2780,9:584,11:598,12:15946,13:9248,14:20904,15:11193,16:30983,17:24830,18:6853,19:4044


chrom: chr4
strand: +
right_annotated: ENSMUSG00000054885.11:4930578G10Rik:protein_coding:866
samples:
,0:18586,1:12791,2:602,3:170,4:79,5:259,7:148,8:23,9:34,10:955,14:657,15:1208,16:908,17:1502,18:1268,19:1881


chrom: chr4
strand: -
right_annotated: ENSMUSG00000094686.1:Ccl21a:protein_coding:870
samples:
,0:10241,1:499,2:224349,3:130192,4:130070,5:141012,6:97825,7:34085,8:89691,9:60934,10:439420,11:224416,12:253807,13:241007,14:1899,15:4114,16:10803,17:8418,18:18133,19:10114


chrom: chr4
strand: -
right_annotated: ENSMUSG00000078722.2:Gm12394:protein_coding:3348
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000078721.1:Fam205a1:protein_coding:4146
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000036062.13:Phf24:protein_coding:6785
samples:
,0:5263,1:4005,2:7430,3:4090,4:6511,5:5197,6:21029,7:3499,14:574141,15:506496,16:908242,17:630432,18:608118,19:498951


chrom: chr4
strand: +
right_annotated: ENSMUSG00000036052.14:Dnajb5:protein_coding:3685
samples:
,0:40651,1:31175,2:30850,3:13159,4:15999,5:19337,6:52938,7:6319,8:31768,9:28819,11:29829,14:159388,15:129402,16:294495,17:206742,18:136737,19:95937


chrom: chr4
strand: -
right_annotated: ENSMUSG00000028452.7:Vcp:protein_coding:3316
samples:
,0:355239,1:228827,2:1166237,3:734289,4:400932,5:725020,6:1579601,7:205198,8:256443,9:170745,10:702827,11:355631,12:112331,13:20199,14:310054,15:186972,16:330846,17:293817,18:406693,19:319614


chrom: chr4
strand: -
right_annotated: ENSMUSG00000028453.10:Fancg:protein_coding:2771
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028454.16:Pigo:protein_coding:4279
samples:
,0:143599,1:104492,2:124303,3:73429,4:67365,5:134767,6:102734,7:10046,8:54546,9:41094,10:237610,11:270,12:66870,13:4401,14:55884,15:15147,16:64764,17:47813,18:31202,19:39924


chrom: chr4
strand: -
right_annotated: ENSMUSG00000028455.15:Stoml2:protein_coding:1874
samples:
,0:28743,1:16340,2:335244,3:233361,4:84306,5:109573,6:555993,7:92920,8:365577,9:277264,10:719804,11:572693,12:65044,13:17586,14:96215,15:77922,16:133431,17:100404,18:136686,19:103260


chrom: chr4
strand: +
right_annotated: ENSMUSG00000097681.1:Gm26643:lincRNA:1274
samples:
,0:3648,1:2104,2:30051,3:17200,4:8616,5:10548,6:44904,7:9853,8:46045,9:31039,10:71571,11:60067,12:5751,13:2165,14:10025,15:8915,16:16043,17:10904,18:16536,19:10454


chrom: chr4
strand: -
right_annotated: ENSMUSG00000036002.12:Fam214b:protein_coding:3912
samples:
,0:172266,1:122306,2:133581,3:54882,4:105729,5:224498,6:272748,7:21493,8:65789,9:85324,10:59760,11:168391,12:45471,13:1350,14:2122,15:4602,16:21493,17:9826,18:18654,19:23091


chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028456.18:Unc13b:protein_coding:17574
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028457.18:Atp8b5:protein_coding:6095
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000035969.15:Rusc2:protein_coding:5628
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000042788.12:Fam166b:protein_coding:1349
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028458.12:Tesk1:protein_coding:3947
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028459.11:Cd72:protein_coding:2767
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028461.12:Ccdc107:protein_coding:892
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000051517.14:Arhgef39:protein_coding:1659
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028464.16:Tpm2:protein_coding:2382
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028465.16:Tln1:protein_coding:8393
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028466.15:Creb3:protein_coding:1956
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028467.15:Gba2:protein_coding:3544
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028468.15:Rgp1:protein_coding:5892
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000078719.2:Msmp:protein_coding:743
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000086043.1:Gm12473:antisense_RNA:579
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028469.15:Npr2:protein_coding:3730
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000066196.11:Spag8:protein_coding:1662
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028470.10:Hint2:protein_coding:610
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000043770.10:Gm12481:processed_pseudogene:297
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000078716.9:Tmem8b:protein_coding:5274
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000081329.1:Gm12492:processed_pseudogene:564
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000111611.1:Olfr157:protein_coding:6617
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028476.13:Reck:protein_coding:4433
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028480.14:Glipr2:protein_coding:2320
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028478.18:Clta:protein_coding:1800
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028479.18:Gne:protein_coding:5801
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000084274.2:Gm12504:transcribed_processed_pseudogene:2231
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000035696.15:Rnf38:protein_coding:5726
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000035683.13:Melk:protein_coding:2955
samples:
,0:18509,1:10697,2:90762,3:95009,4:10427,5:17122,6:13899,7:1066,8:1688,9:169,11:17265,14:73,15:409,16:4787,17:38,18:5255,19:2369


chrom: chr4
strand: +
right_annotated: ENSMUSG00000035649.17:Zcchc7:protein_coding:5372
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000035637.14:Grhpr:protein_coding:1280
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000049657.9:Zbtb5:protein_coding:5606
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000070997.4:1700055D18Rik:antisense_RNA:3720
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028318.14:Polr1e:protein_coding:3446
samples:
,0:27631,1:19546,2:62368,3:40043,4:15557,5:25605,6:106739,7:19126,8:109067,9:107969,10:600490,11:245835,12:11204,13:71265,14:932,15:12022,16:14486,17:12634,18:2422,19:3914


chrom: chr4
strand: -
right_annotated: ENSMUSG00000048232.12:Fbxo10:protein_coding:4635
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000078713.8:Tomm5:protein_coding:868
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000035615.12:Frmpd1:protein_coding:5293
samples:
,0:37310,1:22872,2:7469,3:2378,4:12729,5:28797,6:26696,7:2502,8:19109,9:895,12:62797,15:1775,16:4696,18:873


chrom: chr4
strand: +
right_annotated: ENSMUSG00000035601.9:Trmt10b:protein_coding:2064
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028322.11:Exosc3:protein_coding:1077
samples:
,0:117982,1:71434,2:72595,3:40013,4:24324,5:38595,6:121452,7:15188,8:89463,9:46477,10:139041,11:32303,12:53313,13:13317,14:26827,15:13015,16:22081,17:23525,18:25673,19:16983


chrom: chr4
strand: +
right_annotated: ENSMUSG00000035572.16:Dcaf10:protein_coding:7250
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000045973.18:Slc25a51:protein_coding:4438
samples:
,0:41725,1:25819,2:575573,3:285635,4:208872,5:385616,6:730005,7:148790,8:313735,9:231493,10:302140,11:68497,12:47563,13:53365,14:87827,15:73808,16:126421,17:219500,18:120771,19:142711


chrom: chr4
strand: -
right_annotated: ENSMUSG00000093185.1:Gm25692:miRNA:125
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000044813.15:Shb:protein_coding:2244
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000081559.3:Gm12411:processed_pseudogene:483
samples:
,0:27540,1:17439,2:215825,3:118976,4:43888,5:50014,6:115703,7:37757,8:172381,9:137701,10:273436,11:127777,12:24448,13:15474,14:9869,15:7667,16:12094,17:10612,18:5745,19:6629


chrom: chr4
strand: +
right_annotated: ENSMUSG00000035561.5:Aldh1b1:protein_coding:2298
samples:
,0:55964,1:28315,2:288996,3:133657,4:109046,5:239335,6:50483,12:30124,14:92756,15:50608,16:87995,17:104434,18:142523,19:105747


chrom: chr4
strand: +
right_annotated: ENSMUSG00000035517.17:Tdrd7:protein_coding:3859
samples:
,0:957942,1:663315,2:145947,3:70477,4:94847,5:166315,6:574889,7:80518,8:216537,9:251359,10:99328,11:79781,12:72490,13:23950,14:55275,15:23069,16:37193,17:25170,18:26218,19:18760


chrom: chr4
strand: +
right_annotated: ENSMUSG00000028328.13:Tmod1:protein_coding:3158
samples:
,0:87544,1:56391,2:99283,3:43477,4:53272,5:119492,6:20164717,7:2383093,8:7789371,9:6391871,10:2195220,11:4552496,12:2402334,13:1888971,14:118007,15:108071,16:230853,17:164314,18:322606,19:243220


chrom: chr4
strand: -
right_annotated: ENSMUSG00000035495.15:Tstd2:protein_coding:3726
samples:
,0:31559,1:16663,2:227806,3:115401,4:142360,5:338204,6:14464701,7:1888060,8:5091375,9:4118375,10:1400187,11:2708193,12:1488479,13:992327,14:61789,15:53860,16:92657,17:55436,18:152378,19:78740


chrom: chr4
strand: +
right_annotated: ENSMUSG00000028330.8:Ncbp1:protein_coding:3010
samples:
,0:1095387,1:717486,2:361418,3:201781,4:111198,5:191749,6:397586,7:86299,8:233646,9:132256,10:203656,11:548233,12:83056,13:12976,14:142249,15:82854,16:145654,17:117547,18:128339,19:103060


chrom: chr4
strand: -
right_annotated: ENSMUSG00000028329.13:Xpa:protein_coding:1435
samples:
,0:44537,1:30401,2:57742,3:46264,4:26869,5:32564,6:64716,7:18677,8:15391,9:37721,10:81220,11:65781,12:37955,13:219,14:15894,15:9164,16:25833,17:42242,18:65481,19:40482


chrom: chr4
strand: -
right_annotated: ENSMUSG00000082194.3:Gm12444:processed_pseudogene:877
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000081483.1:Gm12445:processed_pseudogene:885
samples:
,0:238,1:200,2:2863,3:1992,4:640,5:1274,6:3779,7:475,8:4132,9:2523,10:1069,11:2478,12:414,14:2451,15:1258,16:2552,17:2752,18:1502,19:1122


chrom: chr4
strand: +
right_annotated: ENSMUSG00000080816.1:Gm12447:processed_pseudogene:470
samples:
,0:2901,1:1959,2:15029,3:6128,4:1158,5:2652,6:8376,7:1730,8:3766,9:3360,10:8925,11:4430,12:1002,13:1006,14:701,15:289,16:1579,17:335,18:657,19:648


chrom: chr4
strand: -
right_annotated: ENSMUSG00000028331.12:Trmo:protein_coding:1797
samples:
,0:36835,1:25423,2:34614,3:21910,4:10644,5:16651,6:21177,7:9030,8:24507,9:52160,10:68,14:92,15:3260,16:11464,17:13296,18:14396,19:7486


chrom: chr4
strand: +
right_annotated: ENSMUSG00000028333.10:Anp32b:protein_coding:1716
samples:
,0:147056,1:80546,2:739558,3:483799,4:215547,5:346776,6:484230,7:100680,8:174366,9:250438,10:112938,11:211351,12:166049,13:53580,14:9117,15:14184,16:33748,17:36632,18:17821,19:21649


chrom: chr4
strand: +
right_annotated: ENSMUSG00000028334.10:Nans:protein_coding:2179
samples:
,0:26650,1:20011,2:203498,3:166834,4:52508,5:71808,6:87294,7:25379,8:166655,9:182394,10:574374,11:195070,12:77754,13:37,14:42928,15:21828,16:37627,17:42125,18:17667,19:18357


chrom: chr4
strand: +
right_annotated: ENSMUSG00000085990.1:Gm16731:processed_transcript:922
samples:
,0:48713,1:31109,2:7192,3:8064,4:14235,5:28257,6:14503,7:3103,8:553,9:2305,10:22576,11:580,12:2013,13:241,14:2107,15:1072,16:2740,17:2808,18:3157,19:1385


chrom: chr4
strand: -
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028344.12:Invs:protein_coding:5633
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000081953.1:Gm12435:processed_pseudogene:1016
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028345.15:Tex10:protein_coding:3338
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000039693.11:Msantd3:protein_coding:1853
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028347.14:Tmeff1:protein_coding:2461
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000063446.4:Plppr1:protein_coding:3940
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000094082.1:Gm12452:processed_pseudogene:331
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000070985.3:Acnat1:protein_coding:1503
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000044018.3:Mrpl50:protein_coding:2114
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000039634.12:Zfp189:protein_coding:3006
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028309.14:Rnf20:protein_coding:4313
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
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samples:
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chrom: chr4
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000038764.14:Ptpn3:protein_coding:6369
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000095042.1:Gm12537:processed_pseudogene:1002
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000081540.3:Gm12538:processed_pseudogene:486
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000090053.9:Palm2:protein_coding:3482
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000089945.13:Pakap:protein_coding:5163
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000038729.23:Akap2:protein_coding:7735
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028367.5:Txn1:protein_coding:1051
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028369.15:Svep1:protein_coding:11629
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000057280.15:Musk:protein_coding:3438
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000038668.14:Lpar1:protein_coding:3913
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000083834.1:Gm12577:processed_pseudogene:574
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000050812.18:AI314180:protein_coding:9531
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000038630.8:Zkscan16:protein_coding:2794
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028378.6:Ptgr1:protein_coding:2296
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000070972.13:Dnajc25:protein_coding:4417
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000092345.1:Gm20503:protein_coding:1294
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000038607.12:Gng10:protein_coding:1192
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000082978.1:Rpsa-ps11:processed_pseudogene:889
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028381.8:Ugcg:protein_coding:4012
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000038578.15:Susd1:protein_coding:3295
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028382.15:Ptbp3:protein_coding:7247
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000046145.7:1700018M17Rik:pseudogene:456
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028383.17:Hsdl2:protein_coding:2709
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000045071.14:E130308A19Rik:protein_coding:12617
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000038544.14:Inip:protein_coding:3237
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028385.14:Snx30:protein_coding:7314
samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028389.12:Zfp37:protein_coding:3692
samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000066150.12:Slc31a1:protein_coding:4280
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000066149.11:Cdc26:protein_coding:819
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000066148.3:Prpf4:protein_coding:5223
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028392.15:Bspry:protein_coding:2167
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000038422.2:Hdhd3:protein_coding:1205
samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: +
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: -
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samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000028370.7:Pappa:protein_coding:11027
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000028373.16:Astn2:protein_coding:4675
samples:
,0:2625,1:1299,2:1989,3:2996,4:2978,5:3307,6:2145,7:664,8:402,9:5308,11:90,14:691,15:5206,16:7076,17:3,18:5706,19:5413


chrom: chr4
strand: +
right_annotated: ENSMUSG00000051675.13:Trim32:protein_coding:3194
samples:
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chrom: chr4
strand: +
right_annotated: ENSMUSG00000039005.13:Tlr4:protein_coding:5467
samples:
,0:1097,1:1147,2:30238,3:21884,4:35961,5:46191,6:296553,7:21318,8:92785,9:50395,10:5683,11:382507,15:224,17:2974,18:1282,19:50


chrom: chr4
strand: +
right_annotated: ENSMUSG00000083087.1:Gm11249:processed_pseudogene:859
samples:
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chrom: chr4
strand: -
right_annotated: ENSMUSG00000081231.1:Tcp1-ps1:processed_pseudogene:1466
samples:
,0:11382,1:6269,2:3525,3:1649,4:650,5:1385,6:420,7:344,8:165,9:188,11:1018,14:4450,15:1998,16:3528,17:3350,18:1940,19:3848


chrom: chr4
strand: -
right_annotated: ENSMUSG00000028351.5:Brinp1:protein_coding:3212
samples:
,0:3295,1:1171,2:927,3:936,4:247,5:200,6:40888,7:1160,8:1436,10:23117,11:11871,13:872,14:371348,15:499028,16:817723,17:511027,18:957692,19:579964


chrom: chr4
strand: +
right_annotated: ENSMUSG00000082998.3:Gm11221:processed_pseudogene:597
samples:
,0:35902,1:19862,2:68395,3:38113,4:18368,5:27628,6:176748,7:36539,8:125759,9:102821,10:178964,11:210822,12:16239,13:9040,14:14566,15:5270,16:13781,17:11600,18:16418,19:10061


chrom: chr4
strand: +
right_annotated: ENSMUSG00000085627.2:Gm11222:processed_pseudogene:738
samples:
,0:7219,1:5072,2:38161,3:24405,4:15389,5:23741,6:24646,7:3148,8:31123,9:19456,10:104719,11:55129,12:6014,13:10740,14:11768,15:5974,16:13764,17:15951,18:10750,19:9001


chrom: chr4
strand: -
right_annotated: ENSMUSG00000046341.5:Gm11223:processed_pseudogene:450
samples:
,0:205655,1:127592,2:381386,3:240375,4:46919,5:83505,6:428703,7:91515,8:399876,9:232983,10:561812,11:279700,12:96781,13:103131,14:972627,15:458808,16:814297,17:930351,18:622598,19:511921


chrom: chr4
strand: -
right_annotated: ENSMUSG00000084342.1:Gm11224:processed_pseudogene:1111
samples:
,0:54208,1:34655,2:64107,3:37787,4:20307,5:32359,6:50651,7:8211,8:11904,9:11485,10:14759,11:7962,12:3032,13:1657,14:21976,15:14474,16:20854,17:29259,18:38110,19:30576


chrom: chr4
strand: +
right_annotated: ENSMUSG00000082368.1:Gm11225:processed_pseudogene:1049
samples:
,0:3128,1:1848,2:17802,3:6310,4:6429,5:12127,6:1563,7:239,8:613,9:364,10:227,11:705,12:375,13:244,14:3792,15:2638,16:3516,17:6028,18:4527,19:3462


chrom: chr4
strand: -
right_annotated: ENSMUSG00000039298.16:Cdk5rap2:protein_coding:11847
samples:
,0:901598,1:621943,2:464680,3:371947,4:84755,5:121136,6:609100,7:56535,8:391391,9:187436,10:902362,11:1157735,12:201842,13:159063,14:703,15:9280,16:5494,17:169,18:1996,19:3923


chrom: chr4
strand: -
right_annotated: ENSMUSG00000080902.1:Ywhaq-ps3:transcribed_processed_pseudogene:738
samples:
,0:112148,1:65102,2:408489,3:177606,4:154736,5:258539,6:424003,7:83640,8:346663,9:266114,10:737063,11:554815,12:164850,13:91903,14:146607,15:79658,16:147706,17:159495,18:168753,19:111606


chrom: chr4
strand: -
right_annotated: ENSMUSG00000039270.9:Megf9:protein_coding:7924
samples:
,0:57108,1:42570,2:216275,3:100553,4:138880,5:239008,6:404359,7:65661,8:123391,9:90537,11:45799,13:17815,14:147593,15:130037,16:245682,17:196090,18:184170,19:155286


