Generated on 2017-11-14 at 17:17.

Snaptron Compilations and Source Data

Snaptron Compilations (instances)

There are currently (11/16/2016) four Snaptron instances indexing different data sources (modify the example URL for your own queries):

  • TCGA: ~36 million junctions from ~11 thousand public samples from the TCGA consortium sequences using HG38 reference:

http://snaptron.cs.jhu.edu/tcga/snaptron?regions=BRCA1

  • GTEx: ~30 million junctions from ~10 thousand public samples from the GTEx consortium sequences using HG38 reference:

http://snaptron.cs.jhu.edu/gtex/snaptron?regions=KCNIP4

  • SRAv2: ~81 million junctions from ~49 thousand public samples from the Sequence Read Archive using HG38 reference:

http://snaptron.cs.jhu.edu/srav2/snaptron?regions=ABCD3

  • SRAv1 (legacy, replaced by SRAv2): ~42 million junctions from ~21 thousand public samples from the Sequence Read Archive using HG19 reference:

http://snaptron.cs.jhu.edu/srav1/snaptron?regions=KMT2E

Raw Data and Indices

All data and the associated indices backing Snaptron are available here (by compilation): http://snaptron.cs.jhu.edu/data/