Generated on 2023-02-11 at 16:44.

Snaptron User Guide

Questions can be asked in the project’s Gitter channel.

To cite Snaptron:

Christopher Wilks, Phani Gaddipati, Abhinav Nellore, Ben Langmead; Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples, Bioinformatics, (2017), btx547,

There is also the snapcount package by Rone Charles in the Landmead group for querying junctions, genes, and exon counts via R/Bioconductor by region (queries Snaptron web services under the hood).